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Gm5124 predicted pseudogene 5124 [ Mus musculus (house mouse) ]

Gene ID: 331392, updated on 8-Feb-2024

Summary

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Official Symbol
Gm5124provided by MGI
Official Full Name
predicted pseudogene 5124provided by MGI
Gene description
nucleolar and coiled-body phosphoprotein 1 pseudogene
Primary source
MGI:MGI:3643622
See related
Ensembl:ENSMUSG00000121832 AllianceGenome:MGI:3643622
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG331392
Expression
Biased expression in CNS E18 (RPKM 8.5), whole brain E14.5 (RPKM 6.3) and 11 other tissues See more
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Genomic context

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Location:
X A2; X 16.68 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (21227104..21230866)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (21360865..21364627)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930453H23 gene Neighboring gene STARR-seq mESC enhancer starr_46895 Neighboring gene STARR-seq mESC enhancer starr_46896 Neighboring gene predicted gene 6938 Neighboring gene STARR-seq mESC enhancer starr_46898 Neighboring gene STARR-seq mESC enhancer starr_46899 Neighboring gene angiotensin II receptor, type 2 Neighboring gene predicted gene, 22592

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • nucleolar and coiled-body phosphoprotein 1 pseudogene

Clone Names

  • MGC169451

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045668.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI426008, AK032684, BM943806
    Related
    ENSMUST00000127554.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    21227104..21230866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_198633.3: Suppressed sequence

    Description
    NM_198633.3: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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