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E330023G01Rik RIKEN cDNA E330023G01 gene [ Mus musculus (house mouse) ]

Gene ID: 331011, updated on 8-Feb-2024

Summary

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Official Symbol
E330023G01Rikprovided by MGI
Official Full Name
RIKEN cDNA E330023G01 geneprovided by MGI
Primary source
MGI:MGI:5439421
See related
Ensembl:ENSMUSG00000102013 AllianceGenome:MGI:5439421
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E330023G01
Summary
Is expressed in ovary. Used to study blepharophimosis, ptosis, and epicanthus inversus syndrome. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See E330023G01Rik in Genome Data Viewer
Location:
9; 9 E3.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (98630652..98702140, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (98748599..98820087, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3853 Neighboring gene COPI coat complex subunit beta 2 Neighboring gene mitochondrial ribosomal protein S22 Neighboring gene STARR-seq mESC enhancer starr_25005 Neighboring gene STARR-seq mESC enhancer starr_25007 Neighboring gene predicted gene, 39411 Neighboring gene predicted gene, 33563 Neighboring gene predicted gene, 33644 Neighboring gene proline rich 23A, member 1 Neighboring gene proline rich 23A, member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A piggyBac insertion disrupts Foxl2 expression that mimics BPES syndrome in mice. Shi F, et al. Hum Mol Genet, 2014 Jul 15. PMID 24565867
  2. Efficient transposition of the piggyBac (PB) transposon in mammalian cells and mice. Ding S, et al. Cell, 2005 Aug 12. PMID 16096065
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045332.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC140449, AK087804
    Related
    ENSMUST00000186387.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    98630652..98702140 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.