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Ankrd34c ankyrin repeat domain 34C [ Mus musculus (house mouse) ]

Gene ID: 330998, updated on 5-Mar-2024

Summary

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Official Symbol
Ankrd34cprovided by MGI
Official Full Name
ankyrin repeat domain 34Cprovided by MGI
Primary source
MGI:MGI:2685617
See related
Ensembl:ENSMUSG00000047606 AllianceGenome:MGI:2685617
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm771; B230218L05Rik
Summary
Orthologous to human ANKRD34C (ankyrin repeat domain 34C). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in frontal lobe adult (RPKM 1.8), cortex adult (RPKM 1.2) and 2 other tissues See more
Orthologs
human all
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Genomic context

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Location:
9 E3.1; 9 47.24 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (89605986..89620787, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (89723933..89738735, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene membrane integral NOTCH2 associated receptor 1 Neighboring gene STARR-positive B cell enhancer ABC_E6786 Neighboring gene transmembrane p24 trafficking protein 3 Neighboring gene STARR-positive B cell enhancer mm9_chr9:89684874-89685174 Neighboring gene STARR-seq mESC enhancer starr_24878 Neighboring gene RIKEN cDNA 4930524O08 gene Neighboring gene microRNA 184

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in pi-body IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 34C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207260.2 → NP_997143.1  ankyrin repeat domain-containing protein 34C

    See identical proteins and their annotated locations for NP_997143.1

    Status: PROVISIONAL

    Source sequence(s)
    AK045652
    Consensus CDS
    CCDS23397.1
    UniProtKB/Swiss-Prot
    Q8BLB8
    UniProtKB/TrEMBL
    B2RPW9
    Related
    ENSMUSP00000140919.2, ENSMUST00000185470.3
    Conserved Domains (2) summary
    COG0666
    Location:34 → 141
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:43 → 82
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    89605986..89620787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511243.5 → XP_006511306.1  ankyrin repeat domain-containing protein 34C isoform X1

    See identical proteins and their annotated locations for XP_006511306.1

    UniProtKB/Swiss-Prot
    Q8BLB8
    UniProtKB/TrEMBL
    B2RPW9
    Conserved Domains (2) summary
    COG0666
    Location:34 → 141
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:43 → 82
    ANK; ANK repeat [structural motif]

  2. XM_006511242.5 → XP_006511305.1  ankyrin repeat domain-containing protein 34C isoform X1

    See identical proteins and their annotated locations for XP_006511305.1

    UniProtKB/Swiss-Prot
    Q8BLB8
    UniProtKB/TrEMBL
    B2RPW9
    Related
    ENSMUSP00000056787.2, ENSMUST00000060700.4
    Conserved Domains (2) summary
    COG0666
    Location:34 → 141
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:43 → 82
    ANK; ANK repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BLB8.1 GenPept UniProtKB/Swiss-Prot:Q8BLB8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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