U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ankdd1a ankyrin repeat and death domain containing 1A [ Mus musculus (house mouse) ]

Gene ID: 330963, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Ankdd1aprovided by MGI
Official Full Name
ankyrin repeat and death domain containing 1Aprovided by MGI
Primary source
MGI:MGI:2686319
See related
Ensembl:ENSMUSG00000066510 AllianceGenome:MGI:2686319
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1473; EG330963; A730067D02; A730067D02Rik
Summary
Orthologous to human ANKDD1A (ankyrin repeat and death domain containing 1A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in bladder adult (RPKM 3.9), CNS E18 (RPKM 0.4) and 4 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
9 C; 9 35.35 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (65395746..65427691, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (65488464..65520412, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene RAS-like, family 12 Neighboring gene solute carrier family 51, beta subunit Neighboring gene STARR-positive B cell enhancer ABC_E6755 Neighboring gene STARR-positive B cell enhancer ABC_E2295 Neighboring gene mitochondrial methionyl-tRNA formyltransferase Neighboring gene STARR-positive B cell enhancer ABC_E2895 Neighboring gene SPG21, maspardin Neighboring gene STARR-seq mESC enhancer starr_24454 Neighboring gene predicted gene, 17749 Neighboring gene STARR-positive B cell enhancer ABC_E2896 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:65389334-65389517 Neighboring gene STARR-positive B cell enhancer ABC_E2897 Neighboring gene STARR-positive B cell enhancer ABC_E9331 Neighboring gene pleckstrin homology domain containing, family O member 2 Neighboring gene STARR-seq mESC enhancer starr_24458 Neighboring gene STARR-positive B cell enhancer ABC_E892

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ankyrin repeat and death domain-containing protein 1A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370871.1 → NP_001357800.1  ankyrin repeat and death domain-containing protein 1A

    Status: VALIDATED

    Source sequence(s)
    AC114645
    UniProtKB/TrEMBL
    A0A1L1ST07
    Conserved Domains (4) summary
    PHA03095
    Location:96 → 368
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:149 → 179
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:19 → 108
    Ank_2; Ankyrin repeats (3 copies)
    cl14633
    Location:420 → 491
    DD; Death Domain Superfamily of protein-protein interaction domains

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    65395746..65427691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036155086.1 → XP_036010979.1  ankyrin repeat and death domain-containing protein 1A isoform X1

    UniProtKB/TrEMBL
    A0A1L1ST07
    Conserved Domains (3) summary
    PHA03095
    Location:96 → 368
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:149 → 179
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:19 → 108
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_006511596.4 → XP_006511659.1  ankyrin repeat and death domain-containing protein 1A isoform X5

    See identical proteins and their annotated locations for XP_006511659.1

    UniProtKB/TrEMBL
    A0A1L1ST07
    Conserved Domains (3) summary
    PHA03095
    Location:96 → 368
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:149 → 179
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:19 → 108
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_036155087.1 → XP_036010980.1  ankyrin repeat and death domain-containing protein 1A isoform X4

    UniProtKB/TrEMBL
    A0A1L1ST07
    Conserved Domains (3) summary
    PHA03095
    Location:96 → 368
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:149 → 179
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:19 → 108
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_017313713.3 → XP_017169202.1  ankyrin repeat and death domain-containing protein 1A isoform X2

    UniProtKB/TrEMBL
    A0A1L1ST07
    Related
    ENSMUSP00000150130.2, ENSMUST00000217646.2
    Conserved Domains (4) summary
    PHA03095
    Location:96 → 368
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:149 → 179
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:19 → 108
    Ank_2; Ankyrin repeats (3 copies)
    cl14633
    Location:420 → 491
    DD; Death Domain Superfamily of protein-protein interaction domains

  5. XM_017313714.3 → XP_017169203.1  ankyrin repeat and death domain-containing protein 1A isoform X3

    UniProtKB/TrEMBL
    A0A1L1ST07
    Related
    ENSMUSP00000057040.6, ENSMUST00000061766.6
    Conserved Domains (3) summary
    PHA03095
    Location:96 → 368
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:149 → 179
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:19 → 108
    Ank_2; Ankyrin repeats (3 copies)

  6. XM_006511599.5 → XP_006511662.1  ankyrin repeat and death domain-containing protein 1A isoform X6

    See identical proteins and their annotated locations for XP_006511662.1

    Conserved Domains (3) summary
    PHA03095
    Location:96 → 368
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:149 → 179
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:19 → 108
    Ank_2; Ankyrin repeats (3 copies)

RNA

  1. XR_001779211.3 RNA Sequence

  2. XR_870872.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Miscellaneous