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Snapc5 small nuclear RNA activating complex, polypeptide 5 [ Mus musculus (house mouse) ]

Gene ID: 330959, updated on 5-Mar-2024

Summary

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Official Symbol
Snapc5provided by MGI
Official Full Name
small nuclear RNA activating complex, polypeptide 5provided by MGI
Primary source
MGI:MGI:1914282
See related
Ensembl:ENSMUSG00000032398 AllianceGenome:MGI:1914282
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2010103A03Rik
Summary
Predicted to enable RNA polymerase II general transcription initiation factor activity and RNA polymerase III general transcription initiation factor activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be located in nuclear body and nucleolus. Is expressed in genitourinary system. Orthologous to human SNAPC5 (small nuclear RNA activating complex polypeptide 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 24.6), CNS E11.5 (RPKM 14.0) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Snapc5 in Genome Data Viewer
Location:
9 C; 9 34.54 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (64086066..64089972)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (64179297..64182688)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:64027060-64027169 Neighboring gene STARR-seq mESC enhancer starr_24421 Neighboring gene predicted gene, 23136 Neighboring gene predicted gene, 22455 Neighboring gene ribosomal protein L4 Neighboring gene mitogen-activated protein kinase kinase 1 Neighboring gene STARR-seq mESC enhancer starr_24422 Neighboring gene STARR-seq mESC enhancer starr_24424 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:64075662-64075771 Neighboring gene STARR-positive B cell enhancer ABC_E8856 Neighboring gene ubiquitin carboxyl-terminal esterase L4 Neighboring gene STARR-positive B cell enhancer ABC_E2293 Neighboring gene STARR-seq mESC enhancer starr_24425 Neighboring gene STARR-seq mESC enhancer starr_24427 Neighboring gene STARR-positive B cell enhancer ABC_E6754 Neighboring gene timeless interacting protein Neighboring gene predicted gene, 24289

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. In vitro selection of Jun-associated proteins using mRNA display. Horisawa K, et al. Nucleic Acids Res, 2004 Dec 2. PMID 15576676, Free PMC Article
  2. Cell-free cotranslation and selection using in vitro virus for high-throughput analysis of protein-protein interactions and complexes. Miyamoto-Sato E, et al. Genome Res, 2005 May. PMID 15867431, Free PMC Article
  3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  4. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity ISO
Inferred from Sequence Orthology
more info
  
enables RNA polymerase III general transcription initiation factor activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in snRNA transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
involved_in snRNA transcription by RNA polymerase III ISO
Inferred from Sequence Orthology
more info
  
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in transcription initiation at RNA polymerase III promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nuclear body ISO
Inferred from Sequence Orthology
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
snRNA-activating protein complex subunit 5
Names
SNAPc 19 kDa subunit
SNAPc subunit 5
small nuclear RNA activating complex, polypeptide 5, 19kDa
snRNA-activating protein complex 19 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183316.3 → NP_899139.2  snRNA-activating protein complex subunit 5

    See identical proteins and their annotated locations for NP_899139.2

    Status: VALIDATED

    Source sequence(s)
    AC160118
    Consensus CDS
    CCDS23276.1
    UniProtKB/Swiss-Prot
    E9QPK5, Q8R2K7
    Related
    ENSMUSP00000034965.7, ENSMUST00000034965.8
    Conserved Domains (1) summary
    pfam15497
    Location:8 → 82
    SNAPc19; snRNA-activating protein complex subunit 19, SNAPc subunit 19

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    64086066..64089972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036155085.1 → XP_036010978.1  snRNA-activating protein complex subunit 5 isoform X1

    UniProtKB/Swiss-Prot
    E9QPK5, Q8R2K7
    Conserved Domains (1) summary
    pfam15497
    Location:8 → 82
    SNAPc19; snRNA-activating protein complex subunit 19, SNAPc subunit 19
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8R2K7.2 GenPept UniProtKB/Swiss-Prot:Q8R2K7

Gene LinkOut

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