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Fhad1 forkhead-associated phosphopeptide binding domain 1 [ Mus musculus (house mouse) ]

Gene ID: 329977, updated on 7-Apr-2024

Summary

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Official Symbol
Fhad1provided by MGI
Official Full Name
forkhead-associated phosphopeptide binding domain 1provided by MGI
Primary source
MGI:MGI:1920323
See related
Ensembl:ENSMUSG00000051435 AllianceGenome:MGI:1920323
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
B230311F11; 2900090M10Rik
Summary
Is expressed in central nervous system and olfactory epithelium. Orthologous to human FHAD1 (forkhead associated phosphopeptide binding domain 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 39.2) and lung adult (RPKM 2.2) See more
Orthologs
human all
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Genomic context

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Location:
4 D3; 4 74.75 cM
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (141617741..141742438, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (141890430..142015127, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene EF hand domain containing 2 Neighboring gene forkhead-associated phosphopeptide binding domain 1, opposite strand 2 Neighboring gene predicted gene, 46874 Neighboring gene predicted gene, 42338 Neighboring gene predicted gene, 35295 Neighboring gene STARR-positive B cell enhancer mm9_chr4:141508770-141509070 Neighboring gene forkhead-associated phosphopeptide binding domain 1, opposite strand 1 Neighboring gene RIKEN cDNA 4930455G09 gene Neighboring gene STARR-positive B cell enhancer ABC_E10274 Neighboring gene transmembrane protein 51 Neighboring gene STARR-seq mESC enhancer starr_11942 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:141636026-141636227 Neighboring gene Tmem51 opposite strand 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The nuclear localization pattern and interaction partners of GTF2IRD1 demonstrate a role in chromatin regulation. Carmona-Mora P, et al. Hum Genet, 2015 Oct. PMID 26275350
  2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Forkhead-associated phosphopeptide binding domain 1 (FHAD1) deficiency impaired murine sperm motility.
    Title: Forkhead-associated phosphopeptide binding domain 1 (FHAD1) deficiency impaired murine sperm motility.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
forkhead-associated domain-containing protein 1
Names
FHA domain-containing protein 1
forkhead-associated (FHA) phosphopeptide binding domain 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177868.4 → NP_808536.2  forkhead-associated domain-containing protein 1

    See identical proteins and their annotated locations for NP_808536.2

    Status: VALIDATED

    Source sequence(s)
    AL645731, AL663037
    Consensus CDS
    CCDS51349.1
    UniProtKB/Swiss-Prot
    A2AAC3, A6PWD2, Q3UFH8, Q8BLA4, Q8CHV8, Q9CUV2
    Related
    ENSMUSP00000101405.3, ENSMUST00000105779.9
    Conserved Domains (3) summary
    COG1196
    Location:286 → 937
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR03354
    Location:19 → 159
    VI_FHA; type VI secretion system FHA domain protein
    pfam00498
    Location:18 → 84
    FHA; FHA domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    141617741..141742438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320274.2 → XP_017175763.1  forkhead-associated domain-containing protein 1 isoform X11

    Conserved Domains (2) summary
    COG1196
    Location:286 → 925
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  2. XM_030253621.1 → XP_030109481.1  forkhead-associated domain-containing protein 1 isoform X6

    Conserved Domains (2) summary
    COG1196
    Location:324 → 1015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  3. XM_030253618.1 → XP_030109478.1  forkhead-associated domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    COG1196
    Location:324 → 1015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  4. XM_030253617.1 → XP_030109477.1  forkhead-associated domain-containing protein 1 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:324 → 1015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  5. XM_030253620.1 → XP_030109480.1  forkhead-associated domain-containing protein 1 isoform X4

    Conserved Domains (3) summary
    COG1196
    Location:286 → 977
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR03354
    Location:19 → 159
    VI_FHA; type VI secretion system FHA domain protein
    pfam00498
    Location:18 → 84
    FHA; FHA domain

  6. XM_017320272.1 → XP_017175761.1  forkhead-associated domain-containing protein 1 isoform X8

    Conserved Domains (2) summary
    COG1196
    Location:262 → 899
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  7. XM_017320269.1 → XP_017175758.1  forkhead-associated domain-containing protein 1 isoform X5

    Conserved Domains (2) summary
    COG1196
    Location:324 → 975
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  8. XM_030253625.1 → XP_030109485.1  forkhead-associated domain-containing protein 1 isoform X13

    Conserved Domains (3) summary
    COG1196
    Location:324 → 1015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam02463
    Location:713 → 1368
    SMC_N; RecF/RecN/SMC N terminal domain
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  9. XM_030253624.2 → XP_030109484.1  forkhead-associated domain-containing protein 1 isoform X12

    Conserved Domains (2) summary
    COG1196
    Location:324 → 1015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  10. XM_030253623.2 → XP_030109483.1  forkhead-associated domain-containing protein 1 isoform X10

    Conserved Domains (2) summary
    COG1196
    Location:324 → 1015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  11. XM_017320279.1 → XP_017175768.1  forkhead-associated domain-containing protein 1 isoform X14

    Conserved Domains (3) summary
    PTZ00121
    Location:640 → 1258
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:262 → 899
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  12. XM_006538956.5 → XP_006539019.1  forkhead-associated domain-containing protein 1 isoform X9

    See identical proteins and their annotated locations for XP_006539019.1

    UniProtKB/Swiss-Prot
    A2AAC3, A6PWD2, Q3UFH8, Q8BLA4, Q8CHV8, Q9CUV2
    Related
    ENSMUSP00000101406.2, ENSMUST00000105780.8
    Conserved Domains (3) summary
    COG1196
    Location:286 → 937
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR03354
    Location:19 → 159
    VI_FHA; type VI secretion system FHA domain protein
    pfam00498
    Location:18 → 84
    FHA; FHA domain

  13. XM_030253619.2 → XP_030109479.1  forkhead-associated domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    COG1196
    Location:324 → 1015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  14. XM_030253622.2 → XP_030109482.1  forkhead-associated domain-containing protein 1 isoform X7

    Conserved Domains (2) summary
    COG1196
    Location:324 → 1015
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  15. XM_036164201.1 → XP_036020094.1  forkhead-associated domain-containing protein 1 isoform X15

    Conserved Domains (2) summary
    COG1196
    Location:262 → 889
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam00498
    Location:18 → 122
    FHA; FHA domain

  16. XM_017320280.3 → XP_017175769.1  forkhead-associated domain-containing protein 1 isoform X16

    Conserved Domains (3) summary
    TIGR02168
    Location:326 → 737
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR03354
    Location:55 → 197
    VI_FHA; type VI secretion system FHA domain protein
    pfam00498
    Location:18 → 122
    FHA; FHA domain

RNA

  1. XR_003954977.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_028429.1: Suppressed sequence

    Description
    NM_028429.1: This RefSeq was temporarily suppressed because the CDS was partial.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6PWD2.1 GenPept UniProtKB/Swiss-Prot:A6PWD2

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