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9130024F11Rik RIKEN cDNA 9130024F11 gene [ Mus musculus (house mouse) ]

Gene ID: 329160, updated on 8-Feb-2024

Summary

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Official Symbol
9130024F11Rikprovided by MGI
Official Full Name
RIKEN cDNA 9130024F11 geneprovided by MGI
Primary source
MGI:MGI:1926150
See related
Ensembl:ENSMUSG00000087022 AllianceGenome:MGI:1926150
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG329160; B530002L08
Summary
Is expressed in several structures, including alimentary system; nervous system; respiratory system; sensory organ; and skeleton. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 8.6), cortex adult (RPKM 5.5) and 10 other tissues See more
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Genomic context

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Location:
1 C1.3; 1 28.78 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (57010628..57014355)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (56971469..56975196)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_00967 Neighboring gene heat shock transcription factor, Y-linked 2 Neighboring gene STARR-seq mESC enhancer starr_00969 Neighboring gene STARR-seq mESC enhancer starr_00971 Neighboring gene STARR-seq mESC enhancer starr_00972 Neighboring gene special AT-rich sequence binding protein 2 Neighboring gene STARR-seq mESC enhancer starr_00973 Neighboring gene predicted gene, 51624 Neighboring gene STARR-seq mESC enhancer starr_00974 Neighboring gene STARR-seq mESC enhancer starr_00975 Neighboring gene predicted gene, 38484 Neighboring gene RIKEN cDNA 1700126A01 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The neonatal ventromedial hypothalamus transcriptome reveals novel markers with spatially distinct patterning. Kurrasch DM, et al. J Neurosci, 2007 Dec 12. PMID 18077674, Free PMC Article
  2. Ezh2, the histone methyltransferase of PRC2, regulates the balance between self-renewal and differentiation in the cerebral cortex. Pereira JD, et al. Proc Natl Acad Sci U S A, 2010 Sep 7. PMID 20798045, Free PMC Article
  3. Regulatory pathway analysis by high-throughput in situ hybridization. Visel A, et al. PLoS Genet, 2007 Oct. PMID 17953485, Free PMC Article
  4. Single-cell transcriptomic analysis of mouse neocortical development. Loo L, et al. Nat Commun, 2019 Jan 11. PMID 30635555, Free PMC Article
  5. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024325.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC101777, AK046737, BB522198

  2. NR_024326.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK046737, BB522198, BB871787, CD363891
    Related
    ENSMUST00000135238.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    57010628..57014355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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