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Ubtd2 ubiquitin domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 327900, updated on 5-Mar-2024

Summary

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Official Symbol
Ubtd2provided by MGI
Official Full Name
ubiquitin domain containing 2provided by MGI
Primary source
MGI:MGI:2444752
See related
Ensembl:ENSMUSG00000044949 AllianceGenome:MGI:2444752
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930571L24; 9630054F20Rik
Summary
Predicted to be located in cytoplasm. Orthologous to human UBTD2 (ubiquitin domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in limb E14.5 (RPKM 18.8), CNS E11.5 (RPKM 16.7) and 22 other tissues See more
Orthologs
human all
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Genomic context

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Location:
11 A4; 11 18.94 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (32405370..32468709)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (32455370..32518709)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene SH3 and PX domains 2B Neighboring gene predicted gene, 51948 Neighboring gene STARR-positive B cell enhancer ABC_E11474 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:32442680-32442833 Neighboring gene EF-hand calcium binding domain 9 Neighboring gene serine/threonine kinase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ubiquitin domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001361561.1 → NP_001348490.1  ubiquitin domain-containing protein 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL662780, AL669844
    Conserved Domains (2) summary
    cd01794
    Location:75 → 144
    DC_UbP_C; dendritic cell derived ubiquitin-like protein
    pfam16455
    Location:24 → 53
    UBD; Ubiquitin-binding domain

  2. NM_173784.4 → NP_776145.2  ubiquitin domain-containing protein 2 isoform 1

    See identical proteins and their annotated locations for NP_776145.2

    Status: VALIDATED

    Source sequence(s)
    AK076953, BC057026
    Consensus CDS
    CCDS24527.1
    UniProtKB/Swiss-Prot
    A2AAY6, Q6PGH0, Q8C5Y1
    Related
    ENSMUSP00000056765.5, ENSMUST00000051053.5
    Conserved Domains (3) summary
    cd01794
    Location:154 → 223
    DC_UbP_C; dendritic cell derived ubiquitin-like protein
    smart00213
    Location:153 → 223
    UBQ; Ubiquitin homologues
    pfam16455
    Location:28 → 132
    UBD; Ubiquitin-binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    32405370..32468709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PGH0.1 GenPept UniProtKB/Swiss-Prot:Q6PGH0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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