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PUDPP1 pseudouridine 5'-phosphatase pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 327658, updated on 10-Oct-2023

Summary

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Official Symbol
PUDPP1provided by HGNC
Official Full Name
pseudouridine 5'-phosphatase pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:20200
See related
AllianceGenome:HGNC:20200
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM16AY; HDHD1BP; HDHD1P1
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Genomic context

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See PUDPP1 in Genome Data Viewer
Location:
Yq11.221
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (15373504..15375458, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (16280021..16281975, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (17485384..17487338, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene CYCS pseudogene 46 Neighboring gene uncharacterized LOC107987355 Neighboring gene steroid sulfatase (microsomal) pseudogene 1 Neighboring gene small nucleolar RNA SNORA20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation of a new gene from the distal short arm of the human X chromosome that escapes X-inactivation. Yen PH, et al. Hum Mol Genet, 1992 Apr. PMID 1284467
  2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • HDHD family member 1B, pseudogene
  • family with sequence similarity 16, member A, Y-linked
  • haloacid dehalogenase-like hydrolase domain containing 1 pseudogene 1
  • haloacid dehalogenase-like hydrolase domain containing 1A pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_002612.3 

    Range
    101..2055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    15373504..15375458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    16280021..16281975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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