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Samd5 sterile alpha motif domain containing 5 [ Mus musculus (house mouse) ]

Gene ID: 320825, updated on 5-Mar-2024

Summary

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Official Symbol
Samd5provided by MGI
Official Full Name
sterile alpha motif domain containing 5provided by MGI
Primary source
MGI:MGI:2444815
See related
Ensembl:ENSMUSG00000060487 AllianceGenome:MGI:2444815
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E130306M17Rik
Summary
Located in cytoplasm. Is expressed in diencephalon roof plate and thalamus mantle layer. Orthologous to human SAMD5 (sterile alpha motif domain containing 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 1.4), whole brain E14.5 (RPKM 1.0) and 23 other tissues See more
Orthologs
human all
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Genomic context

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Location:
10 A1; 10 3.15 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (9138205..9551670, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (9262461..9675926, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene SAM and SH3 domain containing 1 Neighboring gene predicted gene, 48727 Neighboring gene predicted gene, 51794 Neighboring gene STARR-seq mESC enhancer starr_25728 Neighboring gene STARR-seq mESC enhancer starr_25729 Neighboring gene predicted gene, 48750 Neighboring gene STARR-seq mESC enhancer starr_25730 Neighboring gene STARR-seq mESC enhancer starr_25731 Neighboring gene STARR-seq mESC enhancer starr_25733 Neighboring gene STARR-seq mESC enhancer starr_25734 Neighboring gene STARR-seq mESC enhancer starr_25735 Neighboring gene cytochrome c, somatic pseudogene Neighboring gene predicted gene, 31471 Neighboring gene predicted gene 6150

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Expression and localization of sterile alpha motif domain containing 5 is associated with cell type and malignancy of biliary tree. Yagai T, et al. PLoS One, 2017. PMID 28388653, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
sterile alpha motif domain-containing protein 5
Names
SAM domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177271.3 → NP_796245.2  sterile alpha motif domain-containing protein 5

    See identical proteins and their annotated locations for NP_796245.2

    Status: VALIDATED

    Source sequence(s)
    AK087498, AK132444
    Consensus CDS
    CCDS35836.1
    UniProtKB/Swiss-Prot
    A6H5X3, Q3V1H9, Q8BJC5
    UniProtKB/TrEMBL
    A0A0R4J186
    Related
    ENSMUSP00000097648.3, ENSMUST00000100070.5
    Conserved Domains (2) summary
    cd09527
    Location:2 → 64
    SAM_Samd5; SAM domain of Samd5 subfamily
    smart00454
    Location:6 → 65
    SAM; Sterile alpha motif

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    9138205..9551670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017313970.2 → XP_017169459.1  sterile alpha motif domain-containing protein 5 isoform X1

    UniProtKB/Swiss-Prot
    A6H5X3, Q3V1H9, Q8BJC5
    Conserved Domains (1) summary
    cd09527
    Location:2 → 64
    SAM_Samd5; SAM domain of Samd5 subfamily
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3V1H9.1 GenPept UniProtKB/Swiss-Prot:Q3V1H9

Gene LinkOut

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