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A830018L16Rik RIKEN cDNA A830018L16 gene [ Mus musculus (house mouse) ]

Gene ID: 320492, updated on 5-Mar-2024

Summary

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Official Symbol
A830018L16Rikprovided by MGI
Official Full Name
RIKEN cDNA A830018L16 geneprovided by MGI
Primary source
MGI:MGI:2444149
See related
Ensembl:ENSMUSG00000057715 AllianceGenome:MGI:2444149
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C8orf34 (chromosome 8 open reading frame 34). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cortex adult (RPKM 1.9), frontal lobe adult (RPKM 1.7) and 8 other tissues See more
Orthologs
human all
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Genomic context

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Location:
1 A2; 1 2.57 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (11484121..12046126)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (11413615..11975902)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_00190 Neighboring gene STARR-seq mESC enhancer starr_00191 Neighboring gene predicted gene 28659 Neighboring gene STARR-seq mESC enhancer starr_00193 Neighboring gene STARR-seq mESC enhancer starr_00195 Neighboring gene phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 Neighboring gene predicted gene, 24173 Neighboring gene STARR-seq mESC enhancer starr_00196 Neighboring gene STARR-seq mESC enhancer starr_00198 Neighboring gene STARR-seq mESC enhancer starr_00199 Neighboring gene STARR-seq mESC enhancer starr_00200 Neighboring gene STARR-seq mESC enhancer starr_00202 Neighboring gene STARR-seq mESC enhancer starr_00204 Neighboring gene STARR-seq mESC enhancer starr_00208 Neighboring gene STARR-seq mESC enhancer starr_00209 Neighboring gene STARR-seq mESC enhancer starr_00210 Neighboring gene STARR-seq mESC enhancer starr_00211 Neighboring gene STARR-seq mESC enhancer starr_00212 Neighboring gene STARR-seq mESC enhancer starr_00213 Neighboring gene STARR-seq mESC enhancer starr_00214 Neighboring gene predicted gene, 30898 Neighboring gene predicted gene, 30974

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  2. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C8orf34 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160369.2 → NP_001153841.1  uncharacterized protein C8orf34 homolog isoform 1

    See identical proteins and their annotated locations for NP_001153841.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC140778, AK034391, AK081622, AW456259
    Consensus CDS
    CCDS48219.1
    UniProtKB/TrEMBL
    B2RQF6, B7ZN56
    Related
    ENSMUSP00000117421.2, ENSMUST00000137824.8

  2. NM_001160370.2 → NP_001153842.1  uncharacterized protein C8orf34 homolog isoform 3

    See identical proteins and their annotated locations for NP_001153842.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AK081622, AK136763, CJ257882
    Consensus CDS
    CCDS48220.1
    UniProtKB/Swiss-Prot
    Q8BZJ8
    Related
    ENSMUSP00000119143.2, ENSMUST00000135014.8

  3. NM_001160371.2 → NP_001153843.1  uncharacterized protein C8orf34 homolog isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (4) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AK081222, AK081622, AK136763, CJ257882
    Consensus CDS
    CCDS48218.1
    UniProtKB/Swiss-Prot
    Q8BZJ8
    Related
    ENSMUSP00000132334.3, ENSMUST00000171690.9

  4. NM_001310451.1 → NP_001297380.1  uncharacterized protein C8orf34 homolog isoform 5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (5) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AK034391, AK081622, AW456259
    UniProtKB/TrEMBL
    B7ZN56

  5. NM_001374633.1 → NP_001361562.1  uncharacterized protein C8orf34 homolog isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC102654, AC103635, AC110029, AC140778
    Consensus CDS
    CCDS87813.1
    UniProtKB/TrEMBL
    B7ZN56, B7ZN57
    Related
    ENSMUSP00000137287.3, ENSMUST00000179089.8
    Conserved Domains (1) summary
    pfam17824
    Location:6 → 396
    DUF5586; Family of unknown function (DUF5586)

  6. NM_001374634.1 → NP_001361563.1  uncharacterized protein C8orf34 homolog isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC102654, AC103635, AC110029, AC140778
    UniProtKB/TrEMBL
    B7ZN56
    Conserved Domains (1) summary
    pfam17824
    Location:1 → 323
    DUF5586; Family of unknown function (DUF5586)

  7. NM_001400289.1 → NP_001387218.1  uncharacterized protein C8orf34 homolog isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC102654, AC103635, AC140778

  8. NM_001400291.1 → NP_001387220.1  uncharacterized protein C8orf34 homolog isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC102654

  9. NM_177173.6 → NP_796147.2  uncharacterized protein C8orf34 homolog isoform 2

    See identical proteins and their annotated locations for NP_796147.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 3' end of an exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is 3 aa shorter compared to isoform 1.
    Source sequence(s)
    AK034391, AK081622, AW456259
    Consensus CDS
    CCDS35513.1
    UniProtKB/Swiss-Prot
    Q3UVZ9, Q8BJN6, Q8BUZ5, Q8BZJ8
    UniProtKB/TrEMBL
    B7ZN56
    Related
    ENSMUSP00000043857.8, ENSMUST00000048613.14

RNA

  1. NR_174472.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC102654, AC103635, AC110029, AC140778
    Related
    ENSMUST00000141512.8

  2. NR_174473.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC102654

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    11484121..12046126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030254977.2 → XP_030110837.1  uncharacterized protein C8orf34 homolog isoform X6

    Conserved Domains (1) summary
    pfam17824
    Location:44 → 228
    DUF5586; Family of unknown function (DUF5586)

  2. XM_006495540.4 → XP_006495603.1  uncharacterized protein C8orf34 homolog isoform X1

    UniProtKB/TrEMBL
    B7ZN56
    Conserved Domains (1) summary
    pfam17824
    Location:6 → 369
    DUF5586; Family of unknown function (DUF5586)

  3. XM_030254976.2 → XP_030110836.1  uncharacterized protein C8orf34 homolog isoform X3

    UniProtKB/TrEMBL
    B7ZN56
    Conserved Domains (1) summary
    pfam17824
    Location:6 → 353
    DUF5586; Family of unknown function (DUF5586)

  4. XM_036165706.1 → XP_036021599.1  uncharacterized protein C8orf34 homolog isoform X2

    UniProtKB/TrEMBL
    B7ZN56
    Conserved Domains (1) summary
    pfam17824
    Location:6 → 366
    DUF5586; Family of unknown function (DUF5586)

  5. XM_036165718.1 → XP_036021611.1  uncharacterized protein C8orf34 homolog isoform X6

    Conserved Domains (1) summary
    pfam17824
    Location:44 → 228
    DUF5586; Family of unknown function (DUF5586)

  6. XM_006495544.3 → XP_006495607.1  uncharacterized protein C8orf34 homolog isoform X6

    Conserved Domains (1) summary
    pfam17824
    Location:44 → 228
    DUF5586; Family of unknown function (DUF5586)

  7. XM_036165716.1 → XP_036021609.1  uncharacterized protein C8orf34 homolog isoform X4

    Conserved Domains (1) summary
    pfam17824
    Location:1 → 277
    DUF5586; Family of unknown function (DUF5586)

  8. XM_036165717.1 → XP_036021610.1  uncharacterized protein C8orf34 homolog isoform X5

    Conserved Domains (1) summary
    pfam17824
    Location:1 → 309
    DUF5586; Family of unknown function (DUF5586)

RNA

  1. XR_004942886.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BZJ8.1 GenPept UniProtKB/Swiss-Prot:Q8BZJ8

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