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C330024D21Rik RIKEN cDNA C330024D21 gene [ Mus musculus (house mouse) ]

Gene ID: 320479, updated on 8-Feb-2024

Summary

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Official Symbol
C330024D21Rikprovided by MGI
Official Full Name
RIKEN cDNA C330024D21 geneprovided by MGI
Primary source
MGI:MGI:2444116
See related
Ensembl:ENSMUSG00000107385 AllianceGenome:MGI:2444116
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Bendr; linc1536
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5 C3.1; 5 36.09 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (67621241..67635242)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (67463898..67477899)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene BEN domain containing 4 Neighboring gene predicted gene 42632 Neighboring gene CRISPRi-validated cis-regulatory element for Bend4 and Bendr Neighboring gene predicted gene, 40315 Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene STARR-seq mESC enhancer starr_13319 Neighboring gene STARR-seq mESC enhancer starr_13320 Neighboring gene STARR-seq mESC enhancer starr_13321 Neighboring gene shisa family member 3 Neighboring gene ATPase phospholipid transporting 8A1 Neighboring gene predicted gene 15478

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Local regulation of gene expression by lncRNA promoters, transcription and splicing. Engreitz JM, et al. Nature, 2016 Nov 17. PMID 27783602, Free PMC Article
  2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • Bend4-regulating effects not dependent on the RNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015582.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC122562, AK049327
    Related
    ENSMUST00000201973.4

  2. NR_110363.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' exon structure, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AK049146, AK049327
    Related
    ENSMUST00000202828.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    67621241..67635242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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