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Gm16897 predicted gene, 16897 [ Mus musculus (house mouse) ]

Gene ID: 320400, updated on 8-Feb-2024

Summary

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Official Symbol
Gm16897provided by MGI
Official Full Name
predicted gene, 16897provided by MGI
Primary source
MGI:MGI:4439821
See related
Ensembl:ENSMUSG00000097325 AllianceGenome:MGI:4439821
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C030002c11rik
Expression
Broad expression in bladder adult (RPKM 6.4), subcutaneous fat pad adult (RPKM 4.2) and 24 other tissues See more
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Genomic context

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Location:
1 H6; 1 98.38 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (194638067..194659267, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (194955759..194976959, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene microRNA 3962 Neighboring gene STARR-positive B cell enhancer mm9_chr1:196705793-196706093 Neighboring gene STARR-seq mESC enhancer starr_03500 Neighboring gene predicted gene, 39748 Neighboring gene CD34 antigen Neighboring gene predicted gene, 53516 Neighboring gene STARR-seq mESC enhancer starr_03501 Neighboring gene STARR-seq mESC enhancer starr_03502 Neighboring gene RIKEN cDNA A330023F24 gene Neighboring gene microRNA 29b-2 Neighboring gene microRNA 29c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033564.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK030377
    Related
    ENSMUST00000180780.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    194638067..194659267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177154.2: Suppressed sequence

    Description
    NM_177154.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein Strain
Heading Accession and Version

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