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BC049715 cDNA sequence BC049715 [ Mus musculus (house mouse) ]

Gene ID: 320135, updated on 5-Mar-2024

Summary

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Official Symbol
BC049715provided by MGI
Official Full Name
cDNA sequence BC049715provided by MGI
Primary source
MGI:MGI:3605234
See related
Ensembl:ENSMUSG00000047515 AllianceGenome:MGI:3605234
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C12orf60 (chromosome 12 open reading frame 60). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 12.6) and liver E14.5 (RPKM 0.5) See more
Orthologs
human all
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Genomic context

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See BC049715 in Genome Data Viewer
Location:
6 G1; 6 66.72 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (136805158..136818918)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (136828160..136841920)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_17608 Neighboring gene H4 histone 16 Neighboring gene H2J.A histone Neighboring gene WW domain binding protein 11 Neighboring gene STARR-seq mESC enhancer starr_17611 Neighboring gene single-pass membrane protein with coiled-coil domains 3 Neighboring gene STARR-seq mESC enhancer starr_17612 Neighboring gene ADP-ribosyltransferase 4 Neighboring gene matrix Gla protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C12orf60 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178776.3 → NP_848891.2  uncharacterized protein C12orf60 homolog

    See identical proteins and their annotated locations for NP_848891.2

    Status: VALIDATED

    Source sequence(s)
    BC049715, BX638225
    Consensus CDS
    CCDS39685.1
    UniProtKB/Swiss-Prot
    Q810N5, Q8C8R6
    Related
    ENSMUSP00000049512.7, ENSMUST00000052702.7
    Conserved Domains (1) summary
    pfam15047
    Location:9 → 235
    DUF4533; Protein of unknown function (DUF4533)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    136805158..136818918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017321634.2 → XP_017177123.1  uncharacterized protein C12orf60 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q810N5, Q8C8R6
    Conserved Domains (1) summary
    pfam15047
    Location:9 → 235
    DUF4533; Protein of unknown function (DUF4533)

  2. XM_006506262.4 → XP_006506325.1  uncharacterized protein C12orf60 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506325.1

    UniProtKB/Swiss-Prot
    Q810N5, Q8C8R6
    Conserved Domains (1) summary
    pfam15047
    Location:9 → 235
    DUF4533; Protein of unknown function (DUF4533)

  3. XM_006506265.4 → XP_006506328.1  uncharacterized protein C12orf60 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506328.1

    UniProtKB/Swiss-Prot
    Q810N5, Q8C8R6
    Conserved Domains (1) summary
    pfam15047
    Location:9 → 235
    DUF4533; Protein of unknown function (DUF4533)

  4. XM_017321636.2 → XP_017177125.1  uncharacterized protein C12orf60 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q810N5, Q8C8R6
    Conserved Domains (1) summary
    pfam15047
    Location:9 → 235
    DUF4533; Protein of unknown function (DUF4533)

  5. XM_006506264.4 → XP_006506327.1  uncharacterized protein C12orf60 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506327.1

    UniProtKB/Swiss-Prot
    Q810N5, Q8C8R6
    Conserved Domains (1) summary
    pfam15047
    Location:9 → 235
    DUF4533; Protein of unknown function (DUF4533)

  6. XM_017321635.2 → XP_017177124.1  uncharacterized protein C12orf60 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q810N5, Q8C8R6
    Conserved Domains (1) summary
    pfam15047
    Location:9 → 235
    DUF4533; Protein of unknown function (DUF4533)

  7. XM_006506263.4 → XP_006506326.1  uncharacterized protein C12orf60 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506326.1

    UniProtKB/Swiss-Prot
    Q810N5, Q8C8R6
    Conserved Domains (1) summary
    pfam15047
    Location:9 → 235
    DUF4533; Protein of unknown function (DUF4533)

  8. XM_030255455.2 → XP_030111315.1  uncharacterized protein C12orf60 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q810N5, Q8C8R6
    Conserved Domains (1) summary
    pfam15047
    Location:9 → 235
    DUF4533; Protein of unknown function (DUF4533)

  9. XM_006506266.4 → XP_006506329.1  uncharacterized protein C12orf60 homolog isoform X1

    See identical proteins and their annotated locations for XP_006506329.1

    UniProtKB/Swiss-Prot
    Q810N5, Q8C8R6
    Related
    ENSMUSP00000145015.2, ENSMUST00000203499.2
    Conserved Domains (1) summary
    pfam15047
    Location:9 → 235
    DUF4533; Protein of unknown function (DUF4533)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q810N5.1 GenPept UniProtKB/Swiss-Prot:Q810N5

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