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Rnf222 ring finger protein 222 [ Mus musculus (house mouse) ]

Gene ID: 320040, updated on 5-Mar-2024

Summary

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Official Symbol
Rnf222provided by MGI
Official Full Name
ring finger protein 222provided by MGI
Primary source
MGI:MGI:2443227
See related
Ensembl:ENSMUSG00000046490 AllianceGenome:MGI:2443227
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9930039A11Rik
Summary
Predicted to enable metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF222 (ring finger protein 222). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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See Rnf222 in Genome Data Viewer
Location:
11 B3; 11 42.16 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (68772947..68786605)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (68882121..68895779)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene myosin, heavy polypeptide 10, non-muscle Neighboring gene predicted gene, 53684 Neighboring gene predicted gene, 53685 Neighboring gene nudE neurodevelopment protein 1 like 1 Neighboring gene STARR-positive B cell enhancer ABC_E5235 Neighboring gene STARR-seq mESC enhancer starr_29823 Neighboring gene STARR-seq mESC enhancer starr_29824 Neighboring gene STARR-positive B cell enhancer ABC_E6999 Neighboring gene predicted gene, 22608 Neighboring gene ribosomal protein L26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Ex vivo Quantitative Proteomic Analysis of Serotonin Transporter Interactome: Network Impact of the SERT Ala56 Coding Variant. Quinlan MA, et al. Front Mol Neurosci, 2020. PMID 32581705, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RING finger protein 222

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177060.3 → NP_796034.2  RING finger protein 222

    See identical proteins and their annotated locations for NP_796034.2

    Status: VALIDATED

    Source sequence(s)
    AK028294, AK037028
    Consensus CDS
    CCDS24871.1
    UniProtKB/Swiss-Prot
    B1ARA2, Q8CEF8
    Related
    ENSMUSP00000067364.5, ENSMUST00000065213.5
    Conserved Domains (1) summary
    cd16564
    Location:13 → 65
    RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    68772947..68786605
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533540.3 → XP_006533603.1  RING finger protein 222 isoform X1

    See identical proteins and their annotated locations for XP_006533603.1

    UniProtKB/Swiss-Prot
    B1ARA2, Q8CEF8
    Conserved Domains (1) summary
    cd16564
    Location:13 → 65
    RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins

  2. XM_006533542.4 → XP_006533605.1  RING finger protein 222 isoform X1

    See identical proteins and their annotated locations for XP_006533605.1

    UniProtKB/Swiss-Prot
    B1ARA2, Q8CEF8
    Conserved Domains (1) summary
    cd16564
    Location:13 → 65
    RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins

  3. XM_006533543.3 → XP_006533606.1  RING finger protein 222 isoform X1

    See identical proteins and their annotated locations for XP_006533606.1

    UniProtKB/Swiss-Prot
    B1ARA2, Q8CEF8
    Conserved Domains (1) summary
    cd16564
    Location:13 → 65
    RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CEF8.2 GenPept UniProtKB/Swiss-Prot:Q8CEF8

Gene LinkOut

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