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Glt1d1 glycosyltransferase 1 domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 319804, updated on 21-Apr-2024

Summary

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Official Symbol
Glt1d1provided by MGI
Official Full Name
glycosyltransferase 1 domain containing 1provided by MGI
Primary source
MGI:MGI:2442755
See related
Ensembl:ENSMUSG00000049971 AllianceGenome:MGI:2442755
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5730455A04Rik
Summary
Predicted to enable glycosyltransferase activity. Predicted to be located in cytosol. Orthologous to human GLT1D1 (glycosyltransferase 1 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 16.9), cortex adult (RPKM 4.4) and 10 other tissues See more
Orthologs
human all
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Genomic context

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Location:
5 G1.2- G1.3; 5 66.06 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (127709134..127786438)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (127632070..127709374)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 132C, opposite strand Neighboring gene transmembrane protein 132C Neighboring gene predicted gene, 54294 Neighboring gene STARR-seq mESC enhancer starr_14401 Neighboring gene STARR-seq mESC enhancer starr_14404 Neighboring gene STARR-seq mESC enhancer starr_14405 Neighboring gene solute carrier family 15, member 4 Neighboring gene STARR-seq mESC enhancer starr_14412 Neighboring gene STARR-seq mESC enhancer starr_14414 Neighboring gene transmembrane protein 132D Neighboring gene STARR-seq mESC enhancer starr_14415 Neighboring gene STARR-seq mESC enhancer starr_14419 Neighboring gene predicted gene, 33738

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways. Sang L, et al. Cell, 2011 May 13. PMID 21565611, Free PMC Article
  2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glycosyltransferase 1 domain-containing protein 1
NP_795979.2
XP_006504372.1
XP_006504373.1
XP_006504374.1
XP_011239145.1
XP_030110433.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177005.4 → NP_795979.2  glycosyltransferase 1 domain-containing protein 1 precursor

    See identical proteins and their annotated locations for NP_795979.2

    Status: VALIDATED

    Source sequence(s)
    AK077577, BY337475
    Consensus CDS
    CCDS51651.1
    UniProtKB/Swiss-Prot
    A4FUP9, Q8BWP4
    Related
    ENSMUSP00000113864.2, ENSMUST00000118139.3
    Conserved Domains (2) summary
    COG0438
    Location:58 → 340
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cl10013
    Location:67 → 328
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    127709134..127786438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006504309.4 → XP_006504372.1  glycosyltransferase 1 domain-containing protein 1 isoform X1

    Conserved Domains (1) summary
    cl10013
    Location:2 → 260
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology

  2. XM_011240843.2 → XP_011239145.1  glycosyltransferase 1 domain-containing protein 1 isoform X5

    Conserved Domains (1) summary
    cl10013
    Location:2 → 222
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology

  3. XM_030254573.1 → XP_030110433.1  glycosyltransferase 1 domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    cd03801
    Location:23 → 222
    GT4_PimA-like; phosphatidyl-myo-inositol mannosyltransferase

  4. XM_006504310.3 → XP_006504373.1  glycosyltransferase 1 domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    pfam09413
    Location:13 → 62
    DUF2007; Putative prokaryotic signal transducing protein
    cl00900
    Location:227 → 283
    Ldh_2; Malate/L-lactate dehydrogenase

  5. XM_006504311.3 → XP_006504374.1  glycosyltransferase 1 domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cd03801
    Location:12 → 239
    GT4_PimA-like; phosphatidyl-myo-inositol mannosyltransferase

RNA

  1. XR_377057.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A4FUP9.2 GenPept UniProtKB/Swiss-Prot:A4FUP9

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