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A730056A06Rik RIKEN cDNA A730056A06 gene [ Mus musculus (house mouse) ]

Gene ID: 319783, updated on 8-Feb-2024

Summary

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Official Symbol
A730056A06Rikprovided by MGI
Official Full Name
RIKEN cDNA A730056A06 geneprovided by MGI
Primary source
MGI:MGI:2442718
See related
Ensembl:ENSMUSG00000097756 AllianceGenome:MGI:2442718
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in whole brain E14.5 (RPKM 3.2), ovary adult (RPKM 2.6) and 20 other tissues See more
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Genomic context

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Location:
7 D1; 7 41.83 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (72963554..73025522, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (73313806..73375774, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_19170 Neighboring gene predicted gene, 20083 Neighboring gene predicted gene, 30075 Neighboring gene STARR-seq mESC enhancer starr_19173 Neighboring gene RIKEN cDNA 4930429H19 gene Neighboring gene STARR-seq mESC enhancer starr_19176 Neighboring gene repulsive guidance molecule family member A Neighboring gene predicted gene 44758 Neighboring gene STARR-seq mESC enhancer starr_19180 Neighboring gene STARR-seq mESC enhancer starr_19181 Neighboring gene chromodomain helicase DNA binding protein 2 Neighboring gene STARR-seq mESC enhancer starr_19183 Neighboring gene STARR-seq mESC enhancer starr_19186 Neighboring gene STARR-seq mESC enhancer starr_19187 Neighboring gene CHD2 adjacent suppressive regulatory RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040324.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC169129, BF470505

  2. NR_040325.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AC169129, AK043101, BF470505
    Related
    ENSMUST00000181299.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    72963554..73025522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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