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Snhg11 small nucleolar RNA host gene 11 [ Mus musculus (house mouse) ]

Gene ID: 319317, updated on 10-Mar-2024

Summary

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Official Symbol
Snhg11provided by MGI
Official Full Name
small nucleolar RNA host gene 11provided by MGI
Primary source
MGI:MGI:2441845
See related
Ensembl:ENSMUSG00000044349 AllianceGenome:MGI:2441845
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A930034L06Rik; E130013N09Rik
Summary
Is expressed in blood vessel; gut; liver; nervous system; and retina. Orthologous to human SNHG11 (small nucleolar RNA host gene 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cortex adult (RPKM 377.0), frontal lobe adult (RPKM 361.3) and 6 other tissues See more
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Genomic context

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Location:
2 H1; 2 78.72 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (158217633..158228394)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (158375713..158386474)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element for Snhg11 and Snhg17 Neighboring gene small nucleolar RNA host gene 17 Neighboring gene small nucleolar RNA SNORA71 Neighboring gene predicted gene, 23925 Neighboring gene STARR-positive B cell enhancer ABC_E7878 Neighboring gene predicted gene, 25187 Neighboring gene predicted gene, 25129 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:158235029-158235212 Neighboring gene Ral GTPase activating protein, beta subunit (non-catalytic) Neighboring gene STARR-seq mESC enhancer starr_06233 Neighboring gene predicted gene 14200 Neighboring gene predicted gene, 54127

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Long non-coding RNA SNHG11 regulates the Wnt/β-catenin signaling pathway through rho/ROCK in trabecular meshwork cells. Liu L, et al. FASEB J, 2023 Apr. PMID 36929360
  2. The treasury of the commons: making use of public gene expression resources to better characterize the molecular diversity of inhibitory interneurons in the cerebellar cortex. Schilling K, et al. Cerebellum, 2009 Dec. PMID 19554387
  3. A neurogenomics approach to gene expression analysis in the developing brain. Jensen P, et al. Brain Res Mol Brain Res, 2004 Dec 20. PMID 15582152
  4. Single-cell transcriptomic analysis of mouse neocortical development. Loo L, et al. Nat Commun, 2019 Jan 11. PMID 30635555, Free PMC Article
  5. A genomic atlas of mouse hypothalamic development. Shimogori T, et al. Nat Neurosci, 2010 Jun. PMID 20436479, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LncRNA SNHG11 reprograms glutaminolysis in hepatic stellate cells via Wnt/beta-catenin/GLS axis.
    Title: LncRNA SNHG11 reprograms glutaminolysis in hepatic stellate cells via Wnt/β-catenin/GLS axis.
  2. LncRNA SNHG11 induces ferroptosis in liver injury cells through miR-324-3p/GPX4 axis-mediated sepsis.
    Title: LncRNA SNHG11 induces ferroptosis in liver injury cells through miR-324-3p/GPX4 axis-mediated sepsis.
  3. Long non-coding RNA SNHG11 regulates the Wnt/beta-catenin signaling pathway through rho/ROCK in trabecular meshwork cells.
    Title: Long non-coding RNA SNHG11 regulates the Wnt/β-catenin signaling pathway through rho/ROCK in trabecular meshwork cells.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Other Names

  • small nucleolar RNA host gene 11 (non-protein coding)

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164123.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL844513
    Related
    ENSMUST00000109488.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    158217633..158228394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_175692.3: Suppressed sequence

    Description
    NM_175692.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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