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HLA-F major histocompatibility complex, class I, F [ Homo sapiens (human) ]

Gene ID: 3134, updated on 3-Apr-2024

Summary

Official Symbol
HLA-Fprovided by HGNC
Official Full Name
major histocompatibility complex, class I, Fprovided by HGNC
Primary source
HGNC:HGNC:4963
See related
Ensembl:ENSG00000204642 MIM:143110; AllianceGenome:HGNC:4963
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HLAF; CDA12; HLA-5.4; HLA-CDA12
Summary
This gene belongs to the HLA class I heavy chain paralogues. It encodes a non-classical heavy chain that forms a heterodimer with a beta-2 microglobulin light chain, with the heavy chain anchored in the membrane. Unlike most other HLA heavy chains, this molecule is localized in the endoplasmic reticulum and Golgi apparatus, with a small amount present at the cell surface in some cell types. It contains a divergent peptide-binding groove, and is thought to bind a restricted subset of peptides for immune presentation. This gene exhibits few polymorphisms. Multiple transcript variants encoding different isoforms have been found for this gene. These variants lack a coding exon found in transcripts from other HLA paralogues due to an altered splice acceptor site, resulting in a shorter cytoplasmic domain. [provided by RefSeq, Jul 2008]
Expression
Broad expression in spleen (RPKM 31.0), lymph node (RPKM 20.6) and 24 other tissues See more
Orthologs
NEW
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Try the new Transcript table

Genomic context

Location:
6p22.1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (29723434..29738532)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (29594785..29612450)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (29691211..29695073)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type containing 20 pseudogene 1 Neighboring gene HLA complex group 4 pseudogene 11 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:29691770-29692604 Neighboring gene HLA-F antisense RNA 1 Neighboring gene ribosomal protein L23a pseudogene 1 Neighboring gene MHC class I polypeptide-related sequence E (pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:29716125-29716632 Neighboring gene HLA complex group 9 pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.
EBI GWAS Catalog
A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
EBI GWAS Catalog
Genome-wide association study reveals multiple nasopharyngeal carcinoma-associated loci within the HLA region at chromosome 6p21.3.
EBI GWAS Catalog
Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
EBI GWAS Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Envelope surface glycoprotein gp120 env Treatment of CD4+ T cells with HIV-1 gp120 significantly increases CD4 association with CD3, CD45RA, CD45RB, CD59, CD38, CD26 and HLA class I, and decreases that with CD45RC PubMed
env Conformational changes in HIV-1 gp120, including an enhanced expression of the V3 loop of gp120 and of epitopes that are exposed upon CD4 binding, are consistent with the formation of a multimolecular complex between HLA class I and gp120/160 PubMed
Envelope surface glycoprotein gp160, precursor env HIV-1 gp160-derived peptide p18 presented by H-2Dd class I major histocompatibility complex molecules is processed by angiotensin-1 converting enzyme (ACE) prior to T cell stimulation by the peptide p18 PubMed
Envelope transmembrane glycoprotein gp41 env Soluble HIV-1 gp41 can selectively enhance MHC class I and II expression on human B cells, but does not increase expression of other cell surface antigens such as CD21 and CD54 (ICAM-1) PubMed
env Soluble HIV-1 gp41 enhancement effects on MHC class I and II antigen expression can be inhibited by soluble gp41-binding proteins of 45, 49 and 62 kD from human B cells PubMed
env HIV-1 gp41 selectively enhances MHC class I, ICAM-1, IFN-alpha, IFN-beta, and IFN-omega expression in H9 cells PubMed
Nef nef HIV-1 Nef downregulates the expression of MHC-I at the surface of lymphoid, monocytic and epithelial cells, causing MHC-I molecules to be rapidly internalized, accumulated in endosomal vesicles and degraded PubMed
nef Double (W13A/V16R) and triple (W13A/V16R/M20A) substitution mutants of HIV-1 Nef fail to downregulate MHC-I PubMed
nef HIV-1 Nef-mediated downregulation of MHC-I requires Nef motif EEEE(65)-dependent binding to the sorting protein PACS-2, which targets Nef to the paranuclear region and enables Nef PXXP(75) to bind and activate a trans-Golgi network localized Src kinase PubMed
nef HIV-1 Nef-induced downregulation of MHC-I expression and MHC-I targeting to the trans-Golgi network (TGN) require the binding of Nef to PACS-1, a molecule that controls the TGN localization of the cellular protein furin PubMed
nef HIV-1 Nef downregulates expression of MHC-I by blocking transport of MHC-I molecules to the cell surface through a mechanism that requires phosphoinositide 3-kinase (PI 3-kinase) activity PubMed
nef Deletion of the 19 N-terminal amino acids including the myristoylation signal from HIV-1 Nef inhibits both MHC-I and CD4 downregulation while preserving most CTL, T-helper and B-cell epitopes PubMed
nef Interaction of HIV-1 Nef with the mu subunit of AP adaptor complexes requires the recognition of tyrosine-based sorting signals, which likely facilitates the connection between MHC I and the clathrin-dependent sorting machinery PubMed
nef A methionine residue at amino acid 20 in the alpha-helix domain is required for the ability of HIV-1 Nef to downregulate MHC-I expression but not for the downregulation of CD4 PubMed
nef Four glutamic acids from position 62 to 65 in the SH3 domain of HIV-1 Nef bind to the cytoplasmic tail at position 320Y of MHC-I, and are required for the Nef-mediated downregulation of MHC-I from the cell surface PubMed
nef Amino acid residue Y320 in the MHC-I cytoplasmic domain and residues E62-65 and P78 in HIV-1 Nef are required for interaction with the mu subunit of AP-1 PubMed
nef MHC-I is found in the Rab7(+) vesicles and is targeted for degradation via the activity of the Nef-interacting protein, beta-COP PubMed
Tat tat HIV-1 Tat upregulates MHC class I in monocyte-derived dendritic cells and CD8(+) T cells, thereby driving T cell-mediated immune responses PubMed
tat HIV-1 Tat represses the MHC class I gene promoter by binding to and repressing TAFII250, a component of the general transcription factor TFIID, suggesting a mechanism for HIV-1 to downregulate MHC class I expression and avoid immune surveillance PubMed
Vpu vpu HLA class I-associated immune responses have minor effects on Vpu variability, suggesting that Vpu conformation and function are preserved through many possible combinations of primary and secondary polymorphisms PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables 14-3-3 protein binding IDA
Inferred from Direct Assay
more info
PubMed 
enables TAP1 binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables TAP2 binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables beta-2-microglobulin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables peptide antigen binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables peptide antigen binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class Ib IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class Ib IDA
Inferred from Direct Assay
more info
PubMed 
involved_in antigen processing and presentation of exogenous peptide antigen via MHC class Ib IDA
Inferred from Direct Assay
more info
PubMed 
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of T cell cytokine production IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of natural killer cell cytokine production IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of natural killer cell degranulation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of natural killer cell mediated cytotoxicity IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of T cell mediated cytotoxicity IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of natural killer cell cytokine production IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of natural killer cell degranulation IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane TAS
Traceable Author Statement
more info
 
located_in Golgi membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in Golgi membrane TAS
Traceable Author Statement
more info
 
part_of MHC class I protein complex IEA
Inferred from Electronic Annotation
more info
 
part_of MHC class Ib protein complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
located_in early endosome membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in early endosome membrane TAS
Traceable Author Statement
more info
 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in lumenal side of endoplasmic reticulum membrane TAS
Traceable Author Statement
more info
 
located_in lysosomal membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane HDA PubMed 
located_in phagocytic vesicle membrane TAS
Traceable Author Statement
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
 
located_in recycling endosome membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
HLA class I histocompatibility antigen, alpha chain F
Names
HLA F antigen
MHC class I antigen F
leukocyte antigen F
non-classical MHC class I antigen
nonclassical MHC class I antigen

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_012009.2 RefSeqGene

    Range
    5002..8864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001098478.2NP_001091948.1  HLA class I histocompatibility antigen, alpha chain F isoform 3 precursor

    See identical proteins and their annotated locations for NP_001091948.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks an alternate in-frame coding exon and uses an alternate 3' exon, compared to variant 1. The resulting isoform (3) is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AY253271, BC062991, BM798587, CA436948
    Consensus CDS
    CCDS43439.1
    UniProtKB/TrEMBL
    A0A0G2JNV5
    Related
    ENSP00000397376.2, ENST00000434407.6
    Conserved Domains (1) summary
    pfam00129
    Location:22200
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
  2. NM_001098479.2NP_001091949.1  HLA class I histocompatibility antigen, alpha chain F isoform 1 precursor

    See identical proteins and their annotated locations for NP_001091949.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest protein (isoform 1).
    Source sequence(s)
    BC009260, BM798587, CB528356, CD369507, CT002787
    Consensus CDS
    CCDS43437.1
    UniProtKB/TrEMBL
    A0A140T9B7, Q5JZ48
    Related
    ENSP00000259951.6, ENST00000259951.12
    Conserved Domains (2) summary
    cd07698
    Location:204296
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam00129
    Location:22200
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
  3. NM_018950.3NP_061823.2  HLA class I histocompatibility antigen, alpha chain F isoform 2 precursor

    See identical proteins and their annotated locations for NP_061823.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' exon, compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AY253270, BM798587, CA436948, CD365590
    Consensus CDS
    CCDS43438.1
    UniProtKB/Swiss-Prot
    P30511, Q5JQI8, Q5JQJ1, Q5SPT5, Q860R0, Q8MGQ1, Q8WLP5, Q95HC0, Q9TP68
    UniProtKB/TrEMBL
    A0A346MPT4, Q5JZ47
    Related
    ENSP00000334263.4, ENST00000334668.8
    Conserved Domains (2) summary
    pfam00129
    Location:22200
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    cd21023
    Location:201298
    IgC1_MHC_Ia_HLA-F; Class Ib major histocompatibility complex (MHC) immunoglobulin domain of human leukocyte antigen (HLA) F; member of the C1-set of Ig superfamily (IgSF) domains

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    29723434..29738532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017010813.2XP_016866302.1  HLA class I histocompatibility antigen, alpha chain F isoform X5

    UniProtKB/TrEMBL
    A0A346MPT4
  2. XM_047418720.1XP_047274676.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  3. XM_011514564.2XP_011512866.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

    See identical proteins and their annotated locations for XP_011512866.1

    UniProtKB/TrEMBL
    A0A140T8X0, A0A140T9V0
    Conserved Domains (2) summary
    cd07698
    Location:204296
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam00129
    Location:22200
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
  4. XM_047418718.1XP_047274674.1  HLA class I histocompatibility antigen, alpha chain F isoform X3

  5. XM_047418719.1XP_047274675.1  HLA class I histocompatibility antigen, alpha chain F isoform X1

  6. XM_017010810.1XP_016866299.1  HLA class I histocompatibility antigen, alpha chain F isoform X4

    UniProtKB/TrEMBL
    B4DQ99
  7. XM_017010812.2XP_016866301.1  HLA class I histocompatibility antigen, alpha chain F isoform X6

    UniProtKB/TrEMBL
    A0A140T9B7
  8. XM_047418721.1XP_047274677.1  HLA class I histocompatibility antigen, alpha chain F isoform X7

RNA

  1. XR_001743374.2 RNA Sequence

  2. XR_001743373.2 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    1206571..1225171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054329815.1XP_054185790.1  HLA class I histocompatibility antigen, alpha chain F isoform X8

    UniProtKB/TrEMBL
    D0EV57
  2. XM_054329813.1XP_054185788.1  HLA class I histocompatibility antigen, alpha chain F isoform X5

  3. XM_054329814.1XP_054185789.1  HLA class I histocompatibility antigen, alpha chain F isoform X11

  4. XM_054329816.1XP_054185791.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  5. XM_054329817.1XP_054185792.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  6. XM_054329807.1XP_054185782.1  HLA class I histocompatibility antigen, alpha chain F isoform X3

  7. XM_054329809.1XP_054185784.1  HLA class I histocompatibility antigen, alpha chain F isoform X1

  8. XM_054329808.1XP_054185783.1  HLA class I histocompatibility antigen, alpha chain F isoform X4

  9. XM_054329811.1XP_054185786.1  HLA class I histocompatibility antigen, alpha chain F isoform X10

  10. XM_054329812.1XP_054185787.1  HLA class I histocompatibility antigen, alpha chain F isoform X6

  11. XM_054329810.1XP_054185785.1  HLA class I histocompatibility antigen, alpha chain F isoform X9

  12. XM_054329818.1XP_054185793.1  HLA class I histocompatibility antigen, alpha chain F isoform X7

RNA

  1. XR_008485660.1 RNA Sequence

  2. XR_008485661.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_167245.2 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    985769..1004398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054330301.1XP_054186276.1  HLA class I histocompatibility antigen, alpha chain F isoform X8

    UniProtKB/TrEMBL
    D0EV57
  2. XM_054330302.1XP_054186277.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  3. XM_054330299.1XP_054186274.1  HLA class I histocompatibility antigen, alpha chain F isoform X5

  4. XM_054330300.1XP_054186275.1  HLA class I histocompatibility antigen, alpha chain F isoform X14

  5. XM_054330303.1XP_054186278.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  6. XM_054330295.1XP_054186270.1  HLA class I histocompatibility antigen, alpha chain F isoform X4

  7. XM_054330297.1XP_054186272.1  HLA class I histocompatibility antigen, alpha chain F isoform X13

  8. XM_054330298.1XP_054186273.1  HLA class I histocompatibility antigen, alpha chain F isoform X6

  9. XM_054330296.1XP_054186271.1  HLA class I histocompatibility antigen, alpha chain F isoform X12

  10. XM_054330304.1XP_054186279.1  HLA class I histocompatibility antigen, alpha chain F isoform X15

RNA

  1. XR_008485693.1 RNA Sequence

  2. XR_008485694.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_4

Genomic

  1. NT_167246.2 Reference GRCh38.p14 ALT_REF_LOCI_4

    Range
    985516..1003989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054330596.1XP_054186571.1  HLA class I histocompatibility antigen, alpha chain F isoform X8

    UniProtKB/TrEMBL
    D0EV57
  2. XM_054330594.1XP_054186569.1  HLA class I histocompatibility antigen, alpha chain F isoform X5

  3. XM_054330595.1XP_054186570.1  HLA class I histocompatibility antigen, alpha chain F isoform X18

  4. XM_054330597.1XP_054186572.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  5. XM_054330598.1XP_054186573.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  6. XM_054330590.1XP_054186565.1  HLA class I histocompatibility antigen, alpha chain F isoform X4

  7. XM_054330592.1XP_054186567.1  HLA class I histocompatibility antigen, alpha chain F isoform X17

  8. XM_054330593.1XP_054186568.1  HLA class I histocompatibility antigen, alpha chain F isoform X6

  9. XM_054330591.1XP_054186566.1  HLA class I histocompatibility antigen, alpha chain F isoform X16

  10. XM_054330599.1XP_054186574.1  HLA class I histocompatibility antigen, alpha chain F isoform X19

RNA

  1. XR_008485699.1 RNA Sequence

  2. XR_008485700.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_5

Genomic

  1. NT_167247.2 Reference GRCh38.p14 ALT_REF_LOCI_5

    Range
    986160..988296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_6

Genomic

  1. NT_167248.2 Reference GRCh38.p14 ALT_REF_LOCI_6

    Range
    985785..1004368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054331068.1XP_054187043.1  HLA class I histocompatibility antigen, alpha chain F isoform X8

    UniProtKB/TrEMBL
    D0EV57
  2. XM_054331066.1XP_054187041.1  HLA class I histocompatibility antigen, alpha chain F isoform X5

  3. XM_054331067.1XP_054187042.1  HLA class I histocompatibility antigen, alpha chain F isoform X22

  4. XM_054331069.1XP_054187044.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  5. XM_054331070.1XP_054187045.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  6. XM_054331062.1XP_054187037.1  HLA class I histocompatibility antigen, alpha chain F isoform X4

  7. XM_054331064.1XP_054187039.1  HLA class I histocompatibility antigen, alpha chain F isoform X21

  8. XM_054331065.1XP_054187040.1  HLA class I histocompatibility antigen, alpha chain F isoform X6

  9. XM_054331063.1XP_054187038.1  HLA class I histocompatibility antigen, alpha chain F isoform X20

  10. XM_054331071.1XP_054187046.1  HLA class I histocompatibility antigen, alpha chain F isoform X23

RNA

  1. XR_008485710.1 RNA Sequence

  2. XR_008485711.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_7

Genomic

  1. NT_167249.2 Reference GRCh38.p14 ALT_REF_LOCI_7

    Range
    1029693..1047565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054331334.1XP_054187309.1  HLA class I histocompatibility antigen, alpha chain F isoform X27

  2. XM_054331335.1XP_054187310.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  3. XM_054331337.1XP_054187312.1  HLA class I histocompatibility antigen, alpha chain F isoform X4

  4. XM_054331332.1XP_054187307.1  HLA class I histocompatibility antigen, alpha chain F isoform X25

  5. XM_054331333.1XP_054187308.1  HLA class I histocompatibility antigen, alpha chain F isoform X26

  6. XM_054331331.1XP_054187306.1  HLA class I histocompatibility antigen, alpha chain F isoform X24

  7. XM_054331336.1XP_054187311.1  HLA class I histocompatibility antigen, alpha chain F isoform X28

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    29594785..29612450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054355302.1XP_054211277.1  HLA class I histocompatibility antigen, alpha chain F isoform X3

  2. XM_054355308.1XP_054211283.1  HLA class I histocompatibility antigen, alpha chain F isoform X8

    UniProtKB/TrEMBL
    D0EV57
  3. XM_054355309.1XP_054211284.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  4. XM_054355304.1XP_054211279.1  HLA class I histocompatibility antigen, alpha chain F isoform X4

  5. XM_054355303.1XP_054211278.1  HLA class I histocompatibility antigen, alpha chain F isoform X8

    UniProtKB/TrEMBL
    A0A0G2JH66
  6. XM_054355305.1XP_054211280.1  HLA class I histocompatibility antigen, alpha chain F isoform X31

  7. XM_054355306.1XP_054211281.1  HLA class I histocompatibility antigen, alpha chain F isoform X5

  8. XM_054355307.1XP_054211282.1  HLA class I histocompatibility antigen, alpha chain F isoform X32

  9. XM_054355301.1XP_054211276.1  HLA class I histocompatibility antigen, alpha chain F isoform X2

  10. XM_054355300.1XP_054211275.1  HLA class I histocompatibility antigen, alpha chain F isoform X30

  11. XM_054355298.1XP_054211273.1  HLA class I histocompatibility antigen, alpha chain F isoform X1

  12. XM_054355299.1XP_054211274.1  HLA class I histocompatibility antigen, alpha chain F isoform X29

RNA

  1. XR_008487324.1 RNA Sequence

  2. XR_008487325.1 RNA Sequence

  3. XR_008487326.1 RNA Sequence