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Gpalpp1 GPALPP motifs containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298712, updated on 5-Mar-2024

Summary

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Official Symbol
Gpalpp1provided by RGD
Official Full Name
GPALPP motifs containing 1provided by RGD
Primary source
RGD:1307254
See related
Ensembl:ENSRNOG00000001037 AllianceGenome:RGD:1307254
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307254
Summary
Orthologous to human GPALPP1 (GPALPP motifs containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 151.7), Kidney (RPKM 118.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
15q11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (57818490..57838723, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (51411883..51429435, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (58153501..58171022, complement)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482153 Neighboring gene uncharacterized LOC120097044 Neighboring gene uncharacterized LOC103690313 Neighboring gene RAN, member RAS oncogene family, pseudogene 6 Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene high mobility group AT-hook 1, pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC114554

General protein information

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Preferred Names
GPALPP motifs-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024875.1 → NP_001020046.1  GPALPP motifs-containing protein 1

    See identical proteins and their annotated locations for NP_001020046.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097485
    UniProtKB/Swiss-Prot
    Q4V893
    UniProtKB/TrEMBL
    A6HTU7
    Related
    ENSRNOP00000001371.4, ENSRNOT00000001371.7
    Conserved Domains (1) summary
    pfam12572
    Location:204 → 340
    DUF3752; Protein of unknown function (DUF3752)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    57818490..57838723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039093222.2 → XP_038949150.1  GPALPP motifs-containing protein 1 isoform X1

    Conserved Domains (1) summary
    pfam12572
    Location:47 → 183
    DUF3752; Protein of unknown function (DUF3752)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V893.1 GenPept UniProtKB/Swiss-Prot:Q4V893

Gene LinkOut

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