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IGKV2OR22-4 immunoglobulin kappa variable 2/OR22-4 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 28847, updated on 10-Oct-2023

Summary

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Official Symbol
IGKV2OR22-4provided by HGNC
Official Full Name
immunoglobulin kappa variable 2/OR22-4 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:5813
See related
IMGT/GENE-DB:IGKV2/OR22-4; AllianceGenome:HGNC:5813
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IGKVP6; IGKV2OR224
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Genomic context

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See IGKV2OR22-4 in Genome Data Viewer
Location:
22q11.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (16914064..16915177, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (17590724..17591837, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (17394954..17396067, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene zinc finger protein 402, pseudogene Neighboring gene MT-ND1 pseudogene 17 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13426 Neighboring gene immunoglobulin kappa variable 2/OR22-3 (pseudogene) Neighboring gene immunoglobulin kappa variable 3/OR22-2 (pseudogene)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Localization, analysis and evolution of transposed human immunoglobulin V kappa genes. Lötscher E, et al. Gene, 1988 Sep 30. PMID 2853099
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • IGKV2/OR22-4
  • immunoglobulin kappa variable region pseudogene 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011660.1 

    Range
    101..1214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    16914064..16915177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    17590724..17591837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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