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SSU72P1 SSU72 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 286528, updated on 10-Oct-2023

Summary

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Official Symbol
SSU72P1provided by HGNC
Official Full Name
SSU72 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:43620
See related
Ensembl:ENSG00000226547 AllianceGenome:HGNC:43620
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
Xq23
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (114390674..114391255)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (112798706..112799287)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (113625127..113625708)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD30 Neighboring gene NANOG hESC enhancer GRCh37_chrX:113263094-113263595 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:113281309-113282134 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:113283103-113284080 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:113314234-113315433 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:113370803-113371648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:113405505-113406004 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrX:113511303-113512502 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:113513383-113513884 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrX:113514507-113515706 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:113685459-113686356 Neighboring gene TNPO3 pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:113700885-113701440 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:113836715-113837329 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:113818053-113818558 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:113835484-113836099 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:113841219-113842104 Neighboring gene ribosomal protein L36a pseudogene 53 Neighboring gene 5-hydroxytryptamine receptor 2C Neighboring gene small nucleolar RNA, H/ACA box 35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • SSU72 RNA polymerase II CTD phosphatase homolog pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022691.1 

    Range
    101..682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    114390674..114391255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    112798706..112799287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases