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C8orf34-AS1 C8orf34 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 286189, updated on 10-Oct-2023

Summary

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Official Symbol
C8orf34-AS1provided by HGNC
Official Full Name
C8orf34 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:27840
See related
Ensembl:ENSG00000248801 AllianceGenome:HGNC:27840
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lung (RPKM 2.8), prostate (RPKM 1.2) and 3 other tissues See more
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Genomic context

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Location:
8q13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (68303468..68331491, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (68730163..68758191, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (69215703..69243726, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 Neighboring gene uncharacterized LOC124901957 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:69114328-69114936 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:69141606-69142185 Neighboring gene MPRA-validated peak7062 silencer Neighboring gene MPRA-validated peak7063 silencer Neighboring gene ribosomal protein L31 pseudogene 40 Neighboring gene chromosome 8 open reading frame 34 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:69372559-69373058 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:69422928-69424127 Neighboring gene ret finger protein like 4A pseudogene 2 Neighboring gene ribosomal protein S15a pseudogene 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038877.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC041480
    Related
    ENST00000512294.7

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    68303468..68331491 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    68730163..68758191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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