U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TPI1P2 triosephosphate isomerase 1 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 286016, updated on 16-Jan-2024

Summary

Go to the top of the page Help
Official Symbol
TPI1P2provided by HGNC
Official Full Name
triosephosphate isomerase 1 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:38069
See related
Ensembl:ENSG00000293205 AllianceGenome:HGNC:38069
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
7q32.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (129055223..129057239)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (130368093..130370109)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (128695277..128697293)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene transportin 3 Neighboring gene RNA, 7SL, cytoplasmic 306, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:128622104-128622662 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97543 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128669474-128669974 Neighboring gene ornithine decarboxylase pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26616 Neighboring gene Sharpr-MPRA regulatory region 4017 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_97561 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26617 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26618 Neighboring gene zinc finger protein 195-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26619 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26620

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of the functional gene and several processed pseudogenes in the human triosephosphate isomerase gene family. Brown JR, et al. Mol Cell Biol, 1985 Jul. PMID 4022011, Free PMC Article
  2. A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci. Martin JE, et al. Hum Mol Genet, 2013 Oct 1. PMID 23740937, Free PMC Article
  3. An approach based on a genome-wide association study reveals candidate loci for narcolepsy. Shimada M, et al. Hum Genet, 2010 Oct. PMID 20677014
  4. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Observational study of gene-disease association. (HuGE Navigator)
    Title: An approach based on a genome-wide association study reveals candidate loci for narcolepsy.
Submit: New GeneRIF Correction

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.
EBI GWAS Catalog

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Other Names

  • Putative triosephosphate isomerase-like protein LOC286016

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002187.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018639
    Related
    ENST00000635637.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    129055223..129057239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    130368093..130370109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_203419.1: Suppressed sequence

    Description
    NM_203419.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Miscellaneous