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SEPTIN7P9 septin 7 pseudogene 9 [ Homo sapiens (human) ]

Gene ID: 285961, updated on 10-Oct-2023

Summary

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Official Symbol
SEPTIN7P9provided by HGNC
Official Full Name
septin 7 pseudogene 9provided by HGNC
Primary source
HGNC:HGNC:30810
See related
Ensembl:ENSG00000291056 AllianceGenome:HGNC:30810
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CDC10L; SEPT7L; SEPT7P9; bA291L22.2
Expression
Biased expression in testis (RPKM 10.7), prostate (RPKM 1.0) and 10 other tissues See more
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Genomic context

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Location:
10p11.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (38383023..38402927, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (38427018..38446919, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (38671951..38691855, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene PLD5 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:38644965-38645522 Neighboring gene hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:38690995-38691866 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:38691867-38692738 Neighboring gene uncharacterized LOC101929540 Neighboring gene RNA, U6 small nuclear 1118, pseudogene Neighboring gene long intergenic non-protein coding RNA 999

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CDC10 cell division cycle 10 homolog-like
  • CDC10-like
  • septin 7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027269.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133216
    Related
    ENST00000475691.6

  2. NR_148868.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133216

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    38383023..38402927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160000.1 Reference GRCh38.p14 PATCHES

    Range
    19851..39755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    38427018..38446919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_004808.3: Suppressed sequence

    Description
    NG_004808.3: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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