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INTS4P1 integrator complex subunit 4 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 285905, updated on 10-Oct-2023

Summary

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Official Symbol
INTS4P1provided by HGNC
Official Full Name
integrator complex subunit 4 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:21925
See related
Ensembl:ENSG00000290545 AllianceGenome:HGNC:21925
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
INTS4L1
Expression
Ubiquitous expression in testis (RPKM 4.2), appendix (RPKM 2.9) and 25 other tissues See more
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Genomic context

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Location:
7q11.21
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (65141030..65234222)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (66347254..66440366)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (64601408..64694600)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene general transcription factor IIi pseudogene 14 Neighboring gene uncharacterized LOC124901662 Neighboring gene uncharacterized LOC124901661 Neighboring gene NANOG hESC enhancer GRCh37_chr7:64691122-64691685 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:64703502-64704138 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:64704139-64704774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:64710613-64711206 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:64725505-64726052 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:64727679-64728213 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:64728214-64728747 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:64728796-64729410 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:64733992-64734579 Neighboring gene uncharacterized LOC105375334 Neighboring gene clustered mitochondria homolog pseudogene 7 Neighboring gene zinc finger protein 267 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • integrator complex subunit 4-like 1

Clone Names

  • FLJ25037, MGC133166

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146905.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104073
    Related
    ENST00000587624.6

  2. NR_146906.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104073

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    65141030..65234222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    66347254..66440366
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_182596.1: Suppressed sequence

    Description
    NM_182596.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.

  2. NR_027393.1: Suppressed sequence

    Description
    NR_027393.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
Nucleotide Protein
Heading Accession and Version

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