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LINC02537 long intergenic non-protein coding RNA 2537 [ Homo sapiens (human) ]

Gene ID: 285857, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02537provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2537provided by HGNC
Primary source
HGNC:HGNC:27784
See related
Ensembl:ENSG00000283215 AllianceGenome:HGNC:27784
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02537 in Genome Data Viewer
Location:
6p21.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (43844876..43852333, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (43674374..43681831, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (43812613..43820070, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RNA polymerase I and III subunit C Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17241 Neighboring gene H3K27ac hESC enhancers GRCh37_chr6:43738373-43739138 and GRCh37_chr6:43739139-43739904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43739905-43740670 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43740671-43741436 Neighboring gene Sharpr-MPRA regulatory region 8365 Neighboring gene uncharacterized LOC105375070 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43766999-43767583 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24618 Neighboring gene Sharpr-MPRA regulatory region 5169 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24619 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24620 Neighboring gene uncharacterized LOC105375069 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43819727-43820373 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43819080-43819726 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43818433-43819079 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43825966-43826637 Neighboring gene vascular endothelial growth factor A Neighboring gene uncharacterized LOC105375068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43845203-43845710 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43845711-43846218 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24621 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43854868-43855768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43857224-43858185 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43878694-43879258 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43879259-43879821 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43880895-43881684 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43893291-43894024 Neighboring gene long intergenic non-protein coding RNA 1512

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149142.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157371
    Related
    ENST00000635943.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    43844876..43852333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    43674374..43681831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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