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AHCTF1P1 AT-hook containing transcription factor 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 285116, updated on 10-Oct-2023

Summary

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Official Symbol
AHCTF1P1provided by HGNC
Official Full Name
AT-hook containing transcription factor 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:24620
See related
AllianceGenome:HGNC:24620
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AHCTF1P; ELYS-like
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Genomic context

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Location:
2q24.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (161499067..161507902, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (161955628..161964463, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (162355578..162364413, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, non-ATPase 14 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16713 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12058 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12059 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:162272934-162273556 Neighboring gene RNA, 5S ribosomal pseudogene 108 Neighboring gene NANOG hESC enhancer GRCh37_chr2:162279216-162279737 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12060 Neighboring gene T-box brain transcription factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16714 Neighboring gene small nucleolar RNA U13 Neighboring gene chromosome 17 open reading frame 80 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • AT hook containing transcription factor 1 pseudogene
  • ELYS transcription factor-like protein TMBS62 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_077058.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009487

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    161499067..161507902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    161955628..161964463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002622.5: Suppressed sequence

    Description
    NG_002622.5: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version

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