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LINC00907 long intergenic non-protein coding RNA 907 [ Homo sapiens (human) ]

Gene ID: 284260, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00907provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 907provided by HGNC
Primary source
HGNC:HGNC:44327
See related
Ensembl:ENSG00000267586 AllianceGenome:HGNC:44327
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC00907 in Genome Data Viewer
Location:
18q12.3
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (42186668..42691426)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (42378345..42883242)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (39766633..40271391)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13248 Neighboring gene phosphatidylinositol 3-kinase catalytic subunit type 3 Neighboring gene uncharacterized LOC124904350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13249 Neighboring gene RNA, 5S ribosomal pseudogene 454 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:39967382-39967559 Neighboring gene Sharpr-MPRA regulatory region 1896 Neighboring gene uncharacterized LOC124904351 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:40321669-40322334 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:40323669-40324335 Neighboring gene Ras like without CAAX 2 Neighboring gene synaptotagmin 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The genetic architecture of economic and political preferences. Benjamin DJ, et al. Proc Natl Acad Sci U S A, 2012 May 22. PMID 22566634, Free PMC Article
  2. Genetics of coronary artery calcification among African Americans, a meta-analysis. Wojczynski MK, et al. BMC Med Genet, 2013 Jul 19. PMID 23870195, Free PMC Article
  3. Genome-wide association study of chronic periodontitis in a general German population. Teumer A, et al. J Clin Periodontol, 2013 Nov. PMID 24024966
  4. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. Oshikawa M, et al. Invest Ophthalmol Vis Sci, 2011 Aug 22. PMID 21697133
  5. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genetics of coronary artery calcification among African Americans, a meta-analysis.
EBI GWAS Catalog
Genome-wide association study of chronic periodontitis in a general German population.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog
The genetic architecture of economic and political preferences.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046174.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) consists of most exons.
    Source sequence(s)
    AB593074, AC090239, BC021928
    Related
    ENST00000589068.5

  2. NR_046454.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon and has a shorter and distinct 3' sequence, compared to variant 1.
    Source sequence(s)
    AC090239, BC040725
    Related
    ENST00000585639.5

  3. NR_046456.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has an additional internal exon and a longer and distinct 3' sequence, compared to variant 1.
    Source sequence(s)
    AB593072, AB593074, AC015670, AC090239
    Related
    ENST00000593234.5

  4. NR_046457.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in an internal region and the 3' region, compared to variant 1.
    Source sequence(s)
    AB593075, AC015670, AC090239
    Related
    ENST00000593051.5

  5. NR_046458.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) has a shorter and distinct 3' sequence, compared to variant 1.
    Source sequence(s)
    AB593074, AC090239

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    42186668..42691426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    42378345..42883242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_046455.1: Suppressed sequence

    Description
    NR_046455.1: This RefSeq was removed because it is primarily intronic sequence.
Nucleotide Protein
Heading Accession and Version

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