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KRT18P55 keratin 18 pseudogene 55 [ Homo sapiens (human) ]

Gene ID: 284085, updated on 16-Jan-2024

Summary

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Official Symbol
KRT18P55provided by HGNC
Official Full Name
keratin 18 pseudogene 55provided by HGNC
Primary source
HGNC:HGNC:26874
See related
Ensembl:ENSG00000293325 AllianceGenome:HGNC:26874
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 11.3) See more
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Genomic context

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Location:
17q11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (28275986..28307382, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (29217833..29249228, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (26603012..26634408, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371712 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8334 Neighboring gene pancreatic polypeptide 2, pseudogene Neighboring gene leucine-rich repeat-containing protein 37A3 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:26591629-26592828 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:26594224-26595423 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr17:26609113-26610312 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:26644505-26645330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11921 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11922 Neighboring gene transmembrane protein 97 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:26662195-26662386 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8335 Neighboring gene intraflagellar transport 20 Neighboring gene TNF alpha induced protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:26671214-26671717 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:26672221-26672724 Neighboring gene DNA polymerase delta interacting protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Prognostic Value of LncRNA KRT18P55 in Patients with Intestinal Type of Gastric Cancer. Tayefeh-Gholami S, et al. J Gastrointest Cancer, 2022 Dec. PMID 34766250
  2. A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis. Fogh I, et al. Hum Mol Genet, 2014 Apr 15. PMID 24256812, Free PMC Article
  3. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. Rose JE, et al. Mol Med, 2010 Jul-Aug. PMID 20379614, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Prognostic Value of LncRNA KRT18P55 in Patients with Intestinal Type of Gastric Cancer.
    Title: Prognostic Value of LncRNA KRT18P55 in Patients with Intestinal Type of Gastric Cancer.
  2. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
    Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ40504, MGC138231, MGC138233

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028334.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AK097823, BC112026
    Related
    ENST00000577198.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    28275986..28307382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    29217833..29249228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173624.3: Suppressed sequence

    Description
    NM_173624.3: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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