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FAM169BP family with sequence similarity 169 member B, pseudogene [ Homo sapiens (human) ]

Gene ID: 283777, updated on 5-Mar-2024

Summary

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Official Symbol
FAM169BPprovided by HGNC
Official Full Name
family with sequence similarity 169 member B, pseudogeneprovided by HGNC
Gene description
protein FAM169B
Primary source
HGNC:HGNC:26835
See related
Ensembl:ENSG00000293555 AllianceGenome:HGNC:26835
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM169B
Expression
Low expression observed in reference dataset See more
Orthologs
mouse all
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Genomic context

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See FAM169BP in Genome Data Viewer
Location:
15q26.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (98437162..98514336, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (96201545..96278778, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (98980391..99057565, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371010 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:98721449-98722648 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_42793 Neighboring gene NANOG hESC enhancer GRCh37_chr15:98775748-98776249 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:98776351-98777550 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_42800 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:98800245-98801098 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_42822 Neighboring gene long intergenic non-protein coding RNA 2351 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:98957206-98958405 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:98959168-98959668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:98959669-98960169 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:98964233-98964808 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:98965386-98965961 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10139 Neighboring gene Sharpr-MPRA regulatory regions 4169 and 6096 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6853 Neighboring gene zinc finger CCHC-type containing 9 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr15:99031875-99032074 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:99056319-99056501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99122390-99122890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99122891-99123391 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99135615-99136114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99143220-99143720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99143721-99144221 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99148269-99148769 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:99189870-99190491 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6854 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6855 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6856 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6857 Neighboring gene Sharpr-MPRA regulatory region 7544 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99204502-99205312 Neighboring gene Sharpr-MPRA regulatory region 1749 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:99211661-99212860 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:99213965-99214690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99243457-99243958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99243959-99244458 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:99247546-99247726 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99256117-99256819 Neighboring gene VISTA enhancer hs1932 Neighboring gene IGF1R antisense imprinted non-protein coding RNA Neighboring gene insulin like growth factor 1 receptor Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:99277618-99278148 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:99301249-99301750 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:99301751-99302250 Neighboring gene uncharacterized LOC124903560 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99316261-99316843 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99316844-99317425 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99319525-99320432 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:99320433-99321339

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13. Thompson SD, et al. Arthritis Rheum, 2012 Aug. PMID 22354554, Free PMC Article
  2. Genome-wide population-based association study of extremely overweight young adults--the GOYA study. Paternoster L, et al. PLoS One, 2011. PMID 21935397, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.
EBI GWAS Catalog
Genome-wide population-based association study of extremely overweight young adults--the GOYA study.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • family with sequence similarity 169 member B
  • protein FAM169B

Clone Names

  • FLJ39743

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171054.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC103968
    Related
    ENST00000558256.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    98437162..98514336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    96201545..96278778 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_182562.3: Suppressed sequence

    Description
    NM_182562.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N8A8.3 GenPept UniProtKB/Swiss-Prot:Q8N8A8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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