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LINC02914 long intergenic non-protein coding RNA 2914 [ Homo sapiens (human) ]

Gene ID: 283598, updated on 5-Mar-2024

Summary

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Official Symbol
LINC02914provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2914provided by HGNC
Primary source
HGNC:HGNC:26375
See related
Ensembl:ENSG00000176605 AllianceGenome:HGNC:26375
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf177
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See LINC02914 in Genome Data Viewer
Location:
14q32.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (98711613..98717766)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (92943252..92949407)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (99177950..99184103)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 714, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr14:98912000-98912501 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:98960824-98962023 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:98967301-98968500 Neighboring gene uncharacterized LOC105370657 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:99117229-99117849 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:99203505-99204004 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:99206799-99207299 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_39017 Neighboring gene uncharacterized LOC124903403 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:99285865-99286462 Neighboring gene uncharacterized LOC105370658

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide linkage analyses of non-Hispanic white families identify novel loci for familial late-onset Alzheimer's disease. Kunkle BW, et al. Alzheimers Dement, 2016 Jan. PMID 26365416, Free PMC Article
  2. Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods. Carapito C, et al. J Proteome Res, 2017 Dec 1. PMID 28891297
  3. Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy. Chu AY, et al. Circ Cardiovasc Genet, 2012 Dec. PMID 23118302
  4. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. Yang Q, et al. BMC Med Genet, 2007 Sep 19. PMID 17903294, Free PMC Article
  5. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.
EBI GWAS Catalog
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Clone Names

  • FLJ25773

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_161367.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL096821

  2. NR_161368.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL096821
    Related
    ENST00000650364.1

  3. NR_161369.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL096821

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    98711613..98717766
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    92943252..92949407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001346978.1: Suppressed sequence

    Description
    NM_001346978.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  2. NM_001346979.1: Suppressed sequence

    Description
    NM_001346979.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

  3. NM_182560.2: Suppressed sequence

    Description
    NM_182560.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q52M58.1 GenPept UniProtKB/Swiss-Prot:Q52M58

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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