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LINC02825 long intergenic non-protein coding RNA 2825 [ Homo sapiens (human) ]

Gene ID: 283435, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02825provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2825provided by HGNC
Primary source
HGNC:HGNC:27477
See related
AllianceGenome:HGNC:27477
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
12q24.32
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (126400792..126449327, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (126409561..126457812, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (126885338..126933873, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927531 Neighboring gene uncharacterized LOC107984448 Neighboring gene uncharacterized LOC124903048 Neighboring gene long intergenic non-protein coding RNA 2350 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:126932549-126933748 Neighboring gene long intergenic non-protein coding RNA 2347 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:126937681-126938182 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:126938183-126938682 Neighboring gene family with sequence similarity 32 member E, pseudogene Neighboring gene Sharpr-MPRA regulatory region 7999 Neighboring gene piggyBac transposable element derived 3 pseudogene Neighboring gene piggyBac transposable element derived 3 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147498.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005868, AC007368

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    126400792..126449327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315940.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    179637..180542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    126409561..126457812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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