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Apon apolipoprotein N [ Mus musculus (house mouse) ]

Gene ID: 28194, updated on 8-Feb-2024

Summary

Official Symbol
Aponprovided by MGI
Official Full Name
apolipoprotein Nprovided by MGI
Primary source
MGI:MGI:88931
See related
Ensembl:ENSMUSG00000051716 AllianceGenome:MGI:88931
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D10Ucla2
Summary
Predicted to be involved in cholesterol metabolic process. Predicted to be located in cytoplasm. Predicted to be active in extracellular space. Orthologous to human APONP (apolipoprotein N, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward liver adult (RPKM 149.6) See more
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Genomic context

Location:
10 D3; 10 76.5 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (128090000..128091770)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (128254131..128255901)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene major intrinsic protein of lens fiber Neighboring gene predicted gene, 26847 Neighboring gene timeless circadian clock 1 Neighboring gene STARR-seq mESC enhancer starr_28273 Neighboring gene STARR-positive B cell enhancer ABC_E5199 Neighboring gene apolipoprotein F Neighboring gene signal transducer and activator of transcription 2 Neighboring gene STARR-seq mESC enhancer starr_28274 Neighboring gene interleukin 23, alpha subunit p19

Genomic regions, transcripts, and products

General gene information

Markers

Clone Names

  • MGC37850

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in cholesterol metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISA
Inferred from Sequence Alignment
more info
PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space ISA
Inferred from Sequence Alignment
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133996.3NP_598757.1  apolipoprotein N precursor

    See identical proteins and their annotated locations for NP_598757.1

    Status: VALIDATED

    Source sequence(s)
    AC090489, BY096905, BY463694
    Consensus CDS
    CCDS24267.1
    UniProtKB/TrEMBL
    G3X9D6, Q8BUM4
    Related
    ENSMUSP00000059142.4, ENSMUST00000060782.5
    Conserved Domains (1) summary
    pfam15148
    Location:51246
    Apolipo_F; Apolipoprotein F

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    128090000..128091770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)