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Mtnap1 mitochondrial nucleoid associated protein 1 [ Mus musculus (house mouse) ]

Gene ID: 276852, updated on 20-Apr-2024

Summary

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Official Symbol
Mtnap1provided by MGI
Official Full Name
mitochondrial nucleoid associated protein 1provided by MGI
Primary source
MGI:MGI:106356
See related
Ensembl:ENSMUSG00000041623 AllianceGenome:MGI:106356
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm57859; D11Wsu47e
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C17orf80 (chromosome 17 open reading frame 80). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 66.6), CNS E11.5 (RPKM 6.3) and 7 other tissues See more
Orthologs
human all
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Genomic context

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Location:
11 E2; 11 79.15 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (113574490..113590201)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (113684153..113699375)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 (metal ion transporter), member 11 Neighboring gene STARR-positive B cell enhancer ABC_E4012 Neighboring gene somatostatin receptor 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:113545452-113545561 Neighboring gene STARR-positive B cell enhancer ABC_E4013 Neighboring gene STARR-seq mESC enhancer starr_31100 Neighboring gene component of oligomeric golgi complex 1 Neighboring gene STARR-seq mESC enhancer starr_31103 Neighboring gene VCP nuclear cofactor family member 1 Neighboring gene cleavage and polyadenylation specific factor 4-like Neighboring gene STARR-positive B cell enhancer ABC_E8469 Neighboring gene CDC42 effector protein 4 Neighboring gene predicted gene 11736

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, et al. Hum Mol Genet, 1998 Nov. PMID 9811942
  2. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC30773, MGC57008

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in cell population proliferation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mitochondrial DNA metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of mitochondrial DNA replication IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial nucleoid IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrial nucleoid ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
mitochondrial nucleoid-associated protein 1; uncharacterized protein C17orf80 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001361593.1 → NP_001348522.1  mitochondrial nucleoid-associated protein 1

    Status: VALIDATED

    Source sequence(s)
    AL603706
    Consensus CDS
    CCDS48976.1
    UniProtKB/Swiss-Prot
    Q3UTJ1, Q6PIX9, Q80UV5, Q9CYN0
    Related
    ENSMUSP00000102232.4, ENSMUST00000106621.4

  2. NM_177777.6 → NP_808445.2  mitochondrial nucleoid-associated protein 1

    See identical proteins and their annotated locations for NP_808445.2

    Status: VALIDATED

    Source sequence(s)
    AL603706
    Consensus CDS
    CCDS48976.1
    UniProtKB/Swiss-Prot
    Q3UTJ1, Q6PIX9, Q80UV5, Q9CYN0
    Related
    ENSMUSP00000042025.9, ENSMUST00000042227.15

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    113574490..113590201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011249059.4 → XP_011247361.1  uncharacterized protein C17orf80 homolog isoform X2

    See identical proteins and their annotated locations for XP_011247361.1

    UniProtKB/Swiss-Prot
    Q3UTJ1, Q6PIX9, Q80UV5, Q9CYN0

  2. XM_017314574.3 → XP_017170063.1  uncharacterized protein C17orf80 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q6PIX9

  3. XM_017314577.3 → XP_017170066.1  uncharacterized protein C17orf80 homolog isoform X3

  4. XM_017314578.3 → XP_017170067.1  uncharacterized protein C17orf80 homolog isoform X5

  5. XM_017314575.3 → XP_017170064.1  uncharacterized protein C17orf80 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q6PIX9

  6. XM_017314576.3 → XP_017170065.1  uncharacterized protein C17orf80 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q6PIX9

  7. XM_030246052.2 → XP_030101912.1  uncharacterized protein C17orf80 homolog isoform X3

  8. XM_011249061.4 → XP_011247363.1  uncharacterized protein C17orf80 homolog isoform X4

RNA

  1. XR_004936975.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PIX9.3 GenPept UniProtKB/Swiss-Prot:Q6PIX9

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