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1700088E04Rik RIKEN cDNA 1700088E04 gene [ Mus musculus (house mouse) ]

Gene ID: 27660, updated on 5-Mar-2024

Summary

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Official Symbol
1700088E04Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700088E04 geneprovided by MGI
Primary source
MGI:MGI:1920774
See related
Ensembl:ENSMUSG00000033029 AllianceGenome:MGI:1920774
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ESTJ0827E04
Summary
Is expressed in several structures, including brain; cardiovascular system; genitourinary system; gut; and respiratory system. Orthologous to human C22orf23 (chromosome 22 open reading frame 23). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 50.6), testis adult (RPKM 45.3) and 24 other tissues See more
Orthologs
human all
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Genomic context

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See 1700088E04Rik in Genome Data Viewer
Location:
15 E1; 15 37.7 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (79018855..79025451, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (79134655..79141251, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 54 Neighboring gene STARR-positive B cell enhancer ABC_E1482 Neighboring gene STARR-seq mESC enhancer starr_39166 Neighboring gene eukaryotic translation initiation factor 3, subunit L Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing -like 1 Neighboring gene STARR-positive B cell enhancer ABC_E7388 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide F Neighboring gene D6 enhancer downstream of Sox10 Neighboring gene MCS1C/MCS2 enhancer region 5' of Sox10 Neighboring gene SRY (sex determining region Y)-box 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Comparative analyses of the Dominant megacolon-SOX10 genomic interval in mouse and human. Southard-Smith EM, et al. Mamm Genome, 1999 Jul. PMID 10384052
  2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC106949

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
UPF0193 protein EVG1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310576.1 → NP_001297505.1  UPF0193 protein EVG1 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame coding exon compared to variant 1. The resulting isoform (2) is shorter missing an internal protein segment compared to isoform 1.
    Source sequence(s)
    AK006539, AK007028, AL589670, BQ175214
    Consensus CDS
    CCDS79387.1
    UniProtKB/TrEMBL
    A0A087WRF9
    Related
    ENSMUSP00000140611.2, ENSMUST00000190509.7
    Conserved Domains (1) summary
    pfam05250
    Location:6 → 190
    UPF0193; uncharacterized protein family (UPF0193)

  2. NM_001310579.1 → NP_001297508.1  UPF0193 protein EVG1 homolog isoform 3

    See identical proteins and their annotated locations for NP_001297508.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an in-frame coding exon compared to variant 1. The resulting isoform (3) is shorter missing an internal protein segment compared to isoform 1.
    Source sequence(s)
    AK006539, AK007028, AL589670, BC144714, BQ175214
    Consensus CDS
    CCDS79388.1
    UniProtKB/TrEMBL
    Q4V9V4
    Related
    ENSMUSP00000139884.2, ENSMUST00000190730.7
    Conserved Domains (1) summary
    pfam05250
    Location:6 → 150
    UPF0193; uncharacterized protein family (UPF0193)

  3. NM_001310581.1 → NP_001297510.1  UPF0193 protein EVG1 homolog isoform 4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate donor splice site in the 5' region and lacks an in-frame coding exon compared to variant 1. This results in translation initiation from an in-frame downstream start codon and an isoform (4) with a shorter N-terminus and missing an internal protein segment compared to isoform 1.
    Source sequence(s)
    AK006539, AK007028, AL589670, AL591921, BC144715, BQ175214
    UniProtKB/TrEMBL
    B7ZMP0
    Conserved Domains (1) summary
    pfam05250
    Location:1 → 115
    UPF0193; uncharacterized protein family (UPF0193)

  4. NM_138581.2 → NP_613047.1  UPF0193 protein EVG1 homolog isoform 1

    See identical proteins and their annotated locations for NP_613047.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AA008475, AK006539, AL589670, BB602239
    Consensus CDS
    CCDS27633.1
    UniProtKB/Swiss-Prot
    Q9D9S1
    UniProtKB/TrEMBL
    Q14AC9
    Related
    ENSMUSP00000129244.2, ENSMUST00000169604.8
    Conserved Domains (1) summary
    pfam05250
    Location:6 → 211
    UPF0193; uncharacterized protein family (UPF0193)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    79018855..79025451 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D9S1.1 GenPept UniProtKB/Swiss-Prot:Q9D9S1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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