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Tstd2 thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 272027, updated on 5-Mar-2024

Summary

Official Symbol
Tstd2provided by MGI
Official Full Name
thiosulfate sulfurtransferase (rhodanese)-like domain containing 2provided by MGI
Primary source
MGI:MGI:3039624
See related
Ensembl:ENSMUSG00000035495 AllianceGenome:MGI:3039624
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
3010020C06
Summary
Orthologous to human TSTD2 (thiosulfate sulfurtransferase like domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in heart adult (RPKM 15.4), genital fat pad adult (RPKM 9.8) and 28 other tissues See more
Orthologs
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Genomic context

Location:
4 B1; 4 24.49 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (46114746..46138725, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (46114746..46138725, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene tropomodulin 1 Neighboring gene predicted gene, 52729 Neighboring gene STARR-seq mESC enhancer starr_10118 Neighboring gene predicted gene, 54220 Neighboring gene nuclear cap binding protein subunit 1 Neighboring gene STARR-seq mESC enhancer starr_10120 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:46209123-46209232 Neighboring gene xeroderma pigmentosum, complementation group A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2
Names
likely ortholog of H. sapiens chromosome 9 open reading frame 97 (C9orf97)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355375.1NP_001342304.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    AA914127, AK028258, BP760190, BY013797, CD549731, CO427336
    Consensus CDS
    CCDS38757.1
    UniProtKB/Swiss-Prot
    B1AWH0, Q3U269, Q6PES9, Q8C1D7
    Related
    ENSMUSP00000103399.2, ENSMUST00000107770.2
    Conserved Domains (1) summary
    cl00125
    Location:169459
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
  2. NM_001355376.1NP_001342305.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2

    Status: VALIDATED

    Source sequence(s)
    AA914127, AK028258, BP760190, CD549731, CJ049260, CJ063145, CO427336
    Consensus CDS
    CCDS38757.1
    UniProtKB/Swiss-Prot
    B1AWH0, Q3U269, Q6PES9, Q8C1D7
    Conserved Domains (1) summary
    cl00125
    Location:169459
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
  3. NM_173033.3NP_766621.3  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2

    See identical proteins and their annotated locations for NP_766621.3

    Status: VALIDATED

    Source sequence(s)
    AK028258, AL732615, BY013797, CD549731
    Consensus CDS
    CCDS38757.1
    UniProtKB/Swiss-Prot
    B1AWH0, Q3U269, Q6PES9, Q8C1D7
    Related
    ENSMUSP00000103401.2, ENSMUST00000107772.8
    Conserved Domains (1) summary
    cl00125
    Location:169459
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    46114746..46138725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036164172.1XP_036020065.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X2

    Conserved Domains (1) summary
    cl00125
    Location:7234
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
  2. XM_006537960.4XP_006538023.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006538023.1

    UniProtKB/Swiss-Prot
    B1AWH0, Q3U269, Q6PES9, Q8C1D7
    Conserved Domains (1) summary
    cl00125
    Location:169459
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
  3. XM_006537963.5XP_006538026.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006538026.1

    UniProtKB/Swiss-Prot
    B1AWH0, Q3U269, Q6PES9, Q8C1D7
    Conserved Domains (1) summary
    cl00125
    Location:169459
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
  4. XM_006537962.5XP_006538025.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006538025.1

    UniProtKB/Swiss-Prot
    B1AWH0, Q3U269, Q6PES9, Q8C1D7
    Conserved Domains (1) summary
    cl00125
    Location:169459
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
  5. XM_006537961.5XP_006538024.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006538024.1

    UniProtKB/Swiss-Prot
    B1AWH0, Q3U269, Q6PES9, Q8C1D7
    Conserved Domains (1) summary
    cl00125
    Location:169459
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
  6. XM_036164171.1XP_036020064.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

    UniProtKB/Swiss-Prot
    B1AWH0, Q3U269, Q6PES9, Q8C1D7
    Conserved Domains (1) summary
    cl00125
    Location:169459
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

RNA

  1. XR_004941915.1 RNA Sequence

  2. XR_001784151.3 RNA Sequence

  3. XR_003954957.2 RNA Sequence