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Rbbp8nl RBBP8 N-terminal like [ Mus musculus (house mouse) ]

Gene ID: 271887, updated on 5-Mar-2024

Summary

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Official Symbol
Rbbp8nlprovided by MGI
Official Full Name
RBBP8 N-terminal likeprovided by MGI
Primary source
MGI:MGI:3606212
See related
Ensembl:ENSMUSG00000038980 AllianceGenome:MGI:3606212
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4732416F18
Summary
Orthologous to human RBBP8NL (RBBP8 N-terminal like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in bladder adult (RPKM 2.3), stomach adult (RPKM 2.0) and 12 other tissues See more
Orthologs
human all
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Genomic context

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See Rbbp8nl in Genome Data Viewer
Location:
2 H4; 2 102.8 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (179917039..179931693, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (180275246..180289900, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene microRNA 3091 Neighboring gene CDK5 and Abl enzyme substrate 2 Neighboring gene ribosomal protein S21 Neighboring gene STARR-positive B cell enhancer ABC_E333 Neighboring gene predicted gene, 29943 Neighboring gene GATA binding protein 5 Neighboring gene GATA binding protein 5, opposite strand

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1-CoREST interactome during embryonic stem cell differentiation. Barnes CE, et al. Mol Omics, 2022 Jan 17. PMID 34709266, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
RBBP8 N-terminal-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173031.3 → NP_766619.2  RBBP8 N-terminal-like protein

    See identical proteins and their annotated locations for NP_766619.2

    Status: VALIDATED

    Source sequence(s)
    AK028610, BY714078
    Consensus CDS
    CCDS17174.1
    UniProtKB/TrEMBL
    A2ABX0, Q8CEB4
    Related
    ENSMUSP00000047237.2, ENSMUST00000038529.2
    Conserved Domains (1) summary
    pfam10482
    Location:4 → 122
    CtIP_N; Tumour-suppressor protein CtIP N-terminal domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    179917039..179931693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500651.2 → XP_006500714.1  RBBP8 N-terminal-like protein isoform X1

    UniProtKB/TrEMBL
    Q8CEB4
    Conserved Domains (2) summary
    PRK10263
    Location:297 → 564
    PRK10263; DNA translocase FtsK; Provisional
    pfam10482
    Location:4 → 122
    CtIP_N; tumor-suppressor protein CtIP N-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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