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Tmem169 transmembrane protein 169 [ Mus musculus (house mouse) ]

Gene ID: 271711, updated on 30-Apr-2024

Summary

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Official Symbol
Tmem169provided by MGI
Official Full Name
transmembrane protein 169provided by MGI
Primary source
MGI:MGI:2442781
See related
Ensembl:ENSMUSG00000026188 AllianceGenome:MGI:2442781
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A830020B06Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM169 (transmembrane protein 169). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 7.1), CNS E14 (RPKM 6.4) and 8 other tissues See more
Orthologs
human all
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Genomic context

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Location:
1 C3; 1 36.48 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (72323554..72342263)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (72284351..72303104)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA D230017M19 gene Neighboring gene predicted gene, 25939 Neighboring gene peroxisomal trans-2-enoyl-CoA reductase Neighboring gene predicted gene, 51631 Neighboring gene STARR-positive B cell enhancer ABC_E4322 Neighboring gene STARR-seq mESC enhancer starr_01273 Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 5 Neighboring gene STARR-seq mESC enhancer starr_01274 Neighboring gene predicted gene, 39661

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 169

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418282.1 → NP_001405211.1  transmembrane protein 169

    Status: VALIDATED

    Source sequence(s)
    AC114905
    UniProtKB/Swiss-Prot
    Q8BG50

  2. NM_001418283.1 → NP_001405212.1  transmembrane protein 169

    Status: VALIDATED

    Source sequence(s)
    AC114905
    UniProtKB/Swiss-Prot
    Q8BG50

  3. NM_001418284.1 → NP_001405213.1  transmembrane protein 169

    Status: VALIDATED

    Source sequence(s)
    AC114905
    UniProtKB/Swiss-Prot
    Q8BG50

  4. NM_175564.5 → NP_780773.1  transmembrane protein 169

    See identical proteins and their annotated locations for NP_780773.1

    Status: VALIDATED

    Source sequence(s)
    AC114905
    Consensus CDS
    CCDS15033.1
    UniProtKB/Swiss-Prot
    Q8BG50
    Related
    ENSMUSP00000027380.6, ENSMUST00000027380.12
    Conserved Domains (1) summary
    pfam15052
    Location:147 → 277
    TMEM169; TMEM169 protein family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    72323554..72342263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BG50.1 GenPept UniProtKB/Swiss-Prot:Q8BG50

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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