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Spin4 spindlin family, member 4 [ Mus musculus (house mouse) ]

Gene ID: 270624, updated on 5-Mar-2024

Summary

Official Symbol
Spin4provided by MGI
Official Full Name
spindlin family, member 4provided by MGI
Primary source
MGI:MGI:2444925
See related
Ensembl:ENSMUSG00000071722 AllianceGenome:MGI:2444925
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9630042H07Rik
Summary
Predicted to enable methylated histone binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytosol and nucleoplasm. Orthologous to human SPIN4 (spindlin family member 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See Spin4 in Genome Data Viewer
Location:
X C3; X 41.83 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (94066113..94070288, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (95022507..95026682, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 54087 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92123270-92123571 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92127397-92127698 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92128436-92128737 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92128771-92129071 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92130222-92130523 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92131186-92131487 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92132186-92132487 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92136714-92137015 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92137671-92137972 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92138811-92139112 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92138430-92138731 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92139803-92140104 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92142094-92142394 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92142861-92143162 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92145272-92145572 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92146544-92146845 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92146901-92147202 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92147877-92148177 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92150970-92151271 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92152746-92153047 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92152080-92152381 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92153049-92153349 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92156826-92157127 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92157184-92157485 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92158408-92158708 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92159204-92159505 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92159763-92160064 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92160302-92160603 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92160986-92161287 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92162208-92162509 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92162970-92163271 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92165507-92165808 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92167787-92168088 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92173712-92174012 Neighboring gene STARR-seq mESC enhancer starr_47564 Neighboring gene germ cell-less homolog 1 pseudogene Neighboring gene CDC42 guanine nucleotide exchange factor 9 Neighboring gene STARR-seq mESC enhancer starr_47565 Neighboring gene STARR-seq mESC enhancer starr_47566 Neighboring gene adenylate kinase 1 pseudogene

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables methylated histone binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables methylated histone binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in gamete generation IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
spindlin-4
Names
novel Spin/Ssty repeat containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178753.4NP_848868.1  spindlin-4

    See identical proteins and their annotated locations for NP_848868.1

    Status: VALIDATED

    Source sequence(s)
    AK036158, AK147852, BB059605
    Consensus CDS
    CCDS30282.1
    UniProtKB/Swiss-Prot
    Q8BXD0, Q8K1L2
    Related
    ENSMUSP00000094095.4, ENSMUST00000096367.5
    Conserved Domains (1) summary
    pfam02513
    Location:4189
    Spin-Ssty; Spin/Ssty Family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    94066113..94070288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)