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Ct45a cancer/testis antigen 45 [ Mus musculus (house mouse) ]

Gene ID: 270599, updated on 8-Feb-2024

Summary

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Official Symbol
Ct45aprovided by MGI
Official Full Name
cancer/testis antigen 45provided by MGI
Primary source
MGI:MGI:2685494
See related
Ensembl:ENSMUSG00000064016 AllianceGenome:MGI:2685494
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm648
Summary
Orthologous to several human genes including CT45A1 (cancer/testis antigen family 45 member A1) and CT45A3 (cancer/testis antigen family 45 member A3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward placenta adult (RPKM 16.5) See more
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Genomic context

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Location:
X A5; X 30.06 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (55589233..55614583, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (56543873..56569162, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8761 Neighboring gene 40S ribosomal protein S23 pseudogene Neighboring gene integrator complex subunit 6 like Neighboring gene CapStarr-seq enhancer MGSCv37_chrX:53851179-53851288 Neighboring gene microRNA 5116 Neighboring gene membrane magnesium transporter 1 Neighboring gene predicted gene, 36239

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC270599

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033372.2 → NP_001028544.1  uncharacterized protein LOC270599

    See identical proteins and their annotated locations for NP_001028544.1

    Status: PREDICTED

    Source sequence(s)
    AK146653
    Consensus CDS
    CCDS53075.1
    UniProtKB/TrEMBL
    Q3UJ22
    Related
    ENSMUSP00000079908.5, ENSMUST00000081133.5
    Conserved Domains (1) summary
    pfam15300
    Location:139 → 198
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    55589233..55614583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011247598.2 → XP_011245900.2  uncharacterized protein LOC270599 isoform X1

    Conserved Domains (1) summary
    pfam15300
    Location:169 → 230
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus

  2. XM_006528047.4 → XP_006528110.1  uncharacterized protein LOC270599 isoform X2

    See identical proteins and their annotated locations for XP_006528110.1

    UniProtKB/TrEMBL
    Q3UJ22
    Conserved Domains (1) summary
    pfam15300
    Location:139 → 198
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus

  3. XM_006528046.1 → XP_006528109.1  uncharacterized protein LOC270599 isoform X2

    See identical proteins and their annotated locations for XP_006528109.1

    UniProtKB/TrEMBL
    Q3UJ22
    Conserved Domains (1) summary
    pfam15300
    Location:139 → 198
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus

  4. XM_011247599.3 → XP_011245901.1  uncharacterized protein LOC270599 isoform X2

    See identical proteins and their annotated locations for XP_011245901.1

    UniProtKB/TrEMBL
    Q3UJ22
    Conserved Domains (1) summary
    pfam15300
    Location:139 → 198
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus
Nucleotide Protein Strain
Heading Accession and Version

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