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Nkapd1 NKAP domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 270156, updated on 3-Apr-2024

Summary

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Official Symbol
Nkapd1provided by MGI
Official Full Name
NKAP domain containing 1provided by MGI
Primary source
MGI:MGI:2143205
See related
Ensembl:ENSMUSG00000059820 AllianceGenome:MGI:2143205
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm639
Summary
Predicted to enable identical protein binding activity. Orthologous to human NKAPD1 (NKAP domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in kidney adult (RPKM 8.0), CNS E11.5 (RPKM 6.6) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
9 A5.3; 9 27.75 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (50516542..50528567, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (50605240..50617464, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene interleukin 18 Neighboring gene testis expressed 12 Neighboring gene succinate dehydrogenase complex, subunit D, integral membrane protein Neighboring gene translocase of inner mitochondrial membrane 8B Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:50425377-50425486 Neighboring gene PIH1 domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_24113 Neighboring gene dihydrolipoamide S-acetyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein NKAPD1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134902.2 → NP_001128374.1  uncharacterized protein NKAPD1 isoform 1

    See identical proteins and their annotated locations for NP_001128374.1

    Status: VALIDATED

    Source sequence(s)
    AC025500
    Consensus CDS
    CCDS23166.2
    UniProtKB/TrEMBL
    E9PUQ3, Q6NX79
    Related
    ENSMUSP00000133259.2, ENSMUST00000171462.8
    Conserved Domains (1) summary
    pfam15692
    Location:93 → 147
    NKAP; NF-kappa-B-activating protein

  2. NM_001360340.2 → NP_001347269.1  uncharacterized protein NKAPD1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC025500
    Consensus CDS
    CCDS23166.2
    UniProtKB/TrEMBL
    E9PUQ3, Q6NX79
    Conserved Domains (1) summary
    pfam15692
    Location:93 → 147
    NKAP; NF-kappa-B-activating protein

  3. NM_001411363.1 → NP_001398292.1  uncharacterized protein NKAPD1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC025500

  4. NM_001411364.1 → NP_001398293.1  uncharacterized protein NKAPD1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC025500

  5. NM_212449.3 → NP_997614.2  uncharacterized protein NKAPD1 isoform 1

    See identical proteins and their annotated locations for NP_997614.2

    Status: VALIDATED

    Source sequence(s)
    AC025500
    Consensus CDS
    CCDS23166.2
    UniProtKB/TrEMBL
    E9PUQ3, Q6NX79
    Related
    ENSMUSP00000123319.2, ENSMUST00000131351.8
    Conserved Domains (1) summary
    pfam15692
    Location:93 → 147
    NKAP; NF-kappa-B-activating protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    50516542..50528567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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