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Rbm48 RNA binding motif protein 48 [ Mus musculus (house mouse) ]

Gene ID: 269623, updated on 30-Apr-2024

Summary

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Official Symbol
Rbm48provided by MGI
Official Full Name
RNA binding motif protein 48provided by MGI
Primary source
MGI:MGI:2442653
See related
Ensembl:ENSMUSG00000040302 AllianceGenome:MGI:2442653
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C030048B08Rik
Summary
Predicted to enable RNA binding activity. Predicted to be active in nucleoplasm. Is expressed in alimentary system; cranial ganglion; dorsal root ganglion; skeleton; and telencephalon. Orthologous to human RBM48 (RNA binding motif protein 48). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 3.1), cerebellum adult (RPKM 2.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
5 A1; 5 2.25 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (3633980..3646091, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (3583978..3598090, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase 6 Neighboring gene predicted gene, 29868 Neighboring gene STARR-seq mESC enhancer starr_12311 Neighboring gene STARR-positive B cell enhancer ABC_E4741 Neighboring gene RIKEN cDNA 1700109H08 gene Neighboring gene family with sequence similarity 133, member B Neighboring gene STARR-seq mESC enhancer starr_12313 Neighboring gene STARR-seq mESC enhancer starr_12314 Neighboring gene STARR-positive B cell enhancer ABC_E429 Neighboring gene peroxisomal biogenesis factor 1 Neighboring gene STARR-seq mESC enhancer starr_12316 Neighboring gene GATA zinc finger domain containing 1 Neighboring gene predicted gene, 50624 Neighboring gene transmembrane BAX inhibitor motif containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA-binding protein 48
Names
UPF0712 protein C7orf64 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001405267.1 → NP_001392196.1  RNA-binding protein 48 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC090443

  2. NM_001405269.1 → NP_001392198.1  RNA-binding protein 48 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC090443

  3. NM_172991.5 → NP_766579.4  RNA-binding protein 48 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC090443
    Consensus CDS
    CCDS19064.2
    UniProtKB/Swiss-Prot
    Q8BQM1, Q8C9L5, Q8K2X2
    Related
    ENSMUSP00000040952.9, ENSMUST00000042753.14

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    3633980..3646091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030254532.1 → XP_030110392.1  RNA-binding protein 48 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8K2X2.2 GenPept UniProtKB/Swiss-Prot:Q8K2X2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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