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9930012K11Rik RIKEN cDNA 9930012K11 gene [ Mus musculus (house mouse) ]

Gene ID: 268759, updated on 5-Mar-2024

Summary

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Official Symbol
9930012K11Rikprovided by MGI
Official Full Name
RIKEN cDNA 9930012K11 geneprovided by MGI
Primary source
MGI:MGI:2145726
See related
Ensembl:ENSMUSG00000044551 AllianceGenome:MGI:2145726
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in metanephros; testis; and thyroid gland. Orthologous to human C8orf58 (chromosome 8 open reading frame 58). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in lung adult (RPKM 5.0), thymus adult (RPKM 4.4) and 27 other tissues See more
Orthologs
human all
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Genomic context

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Location:
14 D2; 14 36.25 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (70391854..70396951, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (70154405..70159502, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:70499772-70499955 Neighboring gene bridging integrator 3 Neighboring gene cell cycle activator and apoptosis regulator 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:70553578-70553761 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:70559515-70559758 Neighboring gene PDZ and LIM domain 2 Neighboring gene STARR-positive B cell enhancer ABC_E7331 Neighboring gene sorbin and SH3 domain containing 3 Neighboring gene predicted gene, 26908

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC91159

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C8orf58 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004155.2 → NP_001004155.2  uncharacterized protein C8orf58 homolog isoform 1

    See identical proteins and their annotated locations for NP_001004155.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK132259, BB870379, BC080738
    Consensus CDS
    CCDS36967.1
    UniProtKB/Swiss-Prot
    Q66JV7
    Related
    ENSMUSP00000061834.8, ENSMUST00000058240.14
    Conserved Domains (1) summary
    pfam15552
    Location:78 → 366
    DUF4657; Domain of unknown function (DUF4657)

  2. NM_001112735.1 → NP_001106206.1  uncharacterized protein C8orf58 homolog isoform 2

    See identical proteins and their annotated locations for NP_001106206.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
    Source sequence(s)
    AK132259, BB870379, BC080738
    Consensus CDS
    CCDS49535.1
    UniProtKB/Swiss-Prot
    Q3V1T6, Q66JV7, Q8K281
    Related
    ENSMUSP00000122309.2, ENSMUST00000153871.2
    Conserved Domains (1) summary
    pfam15552
    Location:78 → 365
    DUF4657; Domain of unknown function (DUF4657)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    70391854..70396951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q66JV7.2 GenPept UniProtKB/Swiss-Prot:Q66JV7

Gene LinkOut

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