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RNVU1-2 RNA, variant U1 small nuclear 2 [ Homo sapiens (human) ]

Gene ID: 26860, updated on 10-Oct-2023

Summary

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Official Symbol
RNVU1-2provided by HGNC
Official Full Name
RNA, variant U1 small nuclear 2provided by HGNC
Primary source
HGNC:HGNC:48308
See related
Ensembl:ENSG00000238825 AllianceGenome:HGNC:48308
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U1.1; U1P1; U1P2A; vU1.2; RNU1P2; RNU1P6; vU1.11; RNU1-71; RNU1-12P; RNU1-13P; RNVU1-11
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Genomic context

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Location:
1q21.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (148388490..148388651, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (146418675..146418836)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (147860642..147860803, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:143672224-143673063 Neighboring gene RNA, U1 small nuclear 155 pseudogene Neighboring gene microRNA 6077 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:143686659-143687364 Neighboring gene PDE4DIP pseudogene 6 Neighboring gene RNA, variant U1 small nuclear 3 Neighboring gene uncharacterized LOC124904400

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Human U1 RNA pseudogenes may be generated by both DNA- and RNA-mediated mechanisms. Denison RA, et al. Mol Cell Biol, 1982 Jul. PMID 6085956, Free PMC Article
  2. Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. O'Reilly D, et al. Genome Res, 2013 Feb. PMID 23070852, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, U1 small nuclear 12, pseudogene
  • RNA, U1 small nuclear 13, pseudogene
  • RNA, U1 small nuclear pseudogene 2
  • RNA, U1 small nuclear pseudogene 6
  • RNA, variant U1 small nuclear 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044775.1 

    Range
    101..262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    148388490..148388651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    146418675..146418836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001263.2: Suppressed sequence

    Description
    NG_001263.2: This RefSeq was permanently suppressed because it is now thought that this locus is transcribed.
Nucleotide Protein
Heading Accession and Version

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