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Lsm12 LSM12 homolog [ Mus musculus (house mouse) ]

Gene ID: 268490, updated on 5-Mar-2024

Summary

Official Symbol
Lsm12provided by MGI
Official Full Name
LSM12 homologprovided by MGI
Primary source
MGI:MGI:1919592
See related
Ensembl:ENSMUSG00000020922 AllianceGenome:MGI:1919592
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110059P07; 1110032E16Rik; 2600001B17Rik
Summary
Orthologous to human LSM12 (LSM12 homolog). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in subcutaneous fat pad adult (RPKM 18.6), CNS E11.5 (RPKM 16.7) and 28 other tissues See more
Orthologs
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Genomic context

Location:
11 D; 11 65.6 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (102053323..102077089, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (102162497..102186268, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene 11586 Neighboring gene N-acetylglutamate synthase Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:102017679-102017862 Neighboring gene transmembrane protein 101 Neighboring gene STARR-positive B cell enhancer ABC_E10715 Neighboring gene glucose 6 phosphatase, catalytic, 3 Neighboring gene histone deacetylase 5 Neighboring gene STARR-positive B cell enhancer ABC_E378 Neighboring gene microRNA 8101

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein LSM12
Names
protein LSM12 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172947.3NP_766535.1  protein LSM12

    See identical proteins and their annotated locations for NP_766535.1

    Status: PROVISIONAL

    Source sequence(s)
    AL954730, BX323852
    Consensus CDS
    CCDS25490.1
    UniProtKB/Swiss-Prot
    A2AWS3, Q9D0R8
    Related
    ENSMUSP00000021297.6, ENSMUST00000021297.6
    Conserved Domains (2) summary
    cd01735
    Location:767
    LSm12_N; Like-Sm protein 12, N-terminal domain
    smart00995
    Location:78165
    AD; Anticodon-binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    102053323..102077089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533414.5XP_006533477.1  protein LSM12 isoform X1

    See identical proteins and their annotated locations for XP_006533477.1

    UniProtKB/Swiss-Prot
    A2AWS3, Q9D0R8
    Conserved Domains (2) summary
    cd01735
    Location:767
    LSm12_N; Like-Sm protein 12, N-terminal domain
    smart00995
    Location:78165
    AD; Anticodon-binding domain