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Snord87 small nucleolar RNA, C/D box 87 [ Mus musculus (house mouse) ]

Gene ID: 266793, updated on 8-Feb-2024

Summary

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Official Symbol
Snord87provided by MGI
Official Full Name
small nucleolar RNA, C/D box 87provided by MGI
Primary source
MGI:MGI:2387894
See related
Ensembl:ENSMUSG00000093178 AllianceGenome:MGI:2387894
Gene type
snoRNA
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
U87; Rnu87; MBII-276
Summary
Predicted to enable rRNA 2'-O-ribose methylation guide activity. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
1 A2; 1 2.22 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (10012695..10012768, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (9942470..9942543, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene serum/glucocorticoid regulated kinase 3 Neighboring gene mitochondrial ribosomal protein S36 pseudogene Neighboring gene minichromosome maintenance domain containing 2 Neighboring gene STARR-positive B cell enhancer ABC_E4304 Neighboring gene small nucleolar RNA host gene 6 Neighboring gene transcription factor 24 Neighboring gene protein phosphatase 1, regulatory subunit 42 Neighboring gene STARR-seq mESC enhancer starr_00178 Neighboring gene STARR-seq mESC enhancer starr_00179 Neighboring gene predicted gene, 24674

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. U87 RNA, a novel C/D box small nucleolar RNA from mammalian cells. Gogolevskaya IK, et al. Gene, 2002 Jun 12. PMID 12119114
  2. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. Hüttenhofer A, et al. EMBO J, 2001 Jun 1. PMID 11387227, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • RNA, U87 small nucleolar
  • snoRNA U87

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables rRNA 2'-O-ribose methylation guide activity ISO
Inferred from Sequence Orthology
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_004410.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AF396686
    Related
    ENSMUST00000175437.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    10012695..10012768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases