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CLCP1 Charcot-Leyden crystal protein pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 266626, updated on 10-Oct-2023

Summary

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Official Symbol
CLCP1provided by HGNC
Official Full Name
Charcot-Leyden crystal protein pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:19257
See related
AllianceGenome:HGNC:19257
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See CLCP1 in Genome Data Viewer
Location:
22q11.21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (17424244..17424851, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (18091962..18092569, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (17903292..17903899, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 843, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13437 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13438 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:17855418-17856368 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:17856369-17857317 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:17859097-17859774 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_62431 Neighboring gene NANOG hESC enhancer GRCh37_chr22:17860543-17861103 Neighboring gene CECR2 histone acetyl-lysine reader Neighboring gene TERF2 interacting protein pseudogene 1 Neighboring gene MPRA-validated peak4447 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:17914611-17915170 Neighboring gene MPRA-validated peak4449 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:17944405-17945163 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:17954710-17955263 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:17973322-17973938 Neighboring gene DnaJ heat shock protein family (Hsp40) member A1 pseudogene 6 Neighboring gene Sharpr-MPRA regulatory region 614 Neighboring gene uncharacterized LOC105372850 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18048734-18049485 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18049486-18050236 Neighboring gene solute carrier family 25 member 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A primate subfamily of galectins expressed at the maternal-fetal interface that promote immune cell death. Than NG, et al. Proc Natl Acad Sci U S A, 2009 Jun 16. PMID 19497882, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • Charot-Leyden crystal protein pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_002369.3 

    Range
    101..708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    17424244..17424851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    18091962..18092569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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