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GAPDHP1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 2616, updated on 10-Oct-2023

Summary

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Official Symbol
GAPDHP1provided by HGNC
Official Full Name
glyceraldehyde-3-phosphate dehydrogenase pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:4159
See related
AllianceGenome:HGNC:4159
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GAPDL2; GAPDP1; GAPDHL2
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Genomic context

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Location:
Xp11.4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (39786931..39787828, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (39187111..39188008, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (39646185..39647082, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373178 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:39631621-39632253 Neighboring gene uncharacterized LOC105373177 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:39637201-39637702 Neighboring gene RNA, 7SL, cytoplasmic 732, pseudogene Neighboring gene OOEP pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29528 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:39675935-39676850 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:39676851-39677768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:39686865-39687366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:39687367-39687866 Neighboring gene microRNA 1587

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A glyceraldehyde-3-phosphate dehydrogenase pseudogene on the short arm of the human X chromosomes defines a multigene family. Benham FJ, et al. EMBO J, 1984 Nov. PMID 6542494, Free PMC Article
  2. The glyceraldehyde 3 phosphate dehydrogenase gene family: structure of a human cDNA and of an X chromosome linked pseudogene; amazing complexity of the gene family in mouse. Hanauer A, et al. EMBO J, 1984 Nov. PMID 6096136, Free PMC Article
  3. High-throughput analysis of the RNA-induced silencing complex in myotonic dystrophy type 1 patients identifies the dysregulation of miR-29c and its target ASB2. Cappella M, et al. Cell Death Dis, 2018 Jun 28. PMID 29955039, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • glyceraldehyde-3-phosphate dehydrogenase-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001123.6 

    Range
    101..998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    39786931..39787828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    39187111..39188008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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