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Or13p4 olfactory receptor family 13 subfamily P member 4 [ Mus musculus (house mouse) ]

Gene ID: 258708, updated on 8-Feb-2024

Summary

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Official Symbol
Or13p4provided by MGI
Official Full Name
olfactory receptor family 13 subfamily P member 4provided by MGI
Primary source
MGI:MGI:3031176
See related
Ensembl:ENSMUSG00000043383 AllianceGenome:MGI:3031176
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MOR258-3; Olfr1342
Summary
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Expression
Restricted expression toward lung adult (RPKM 2.6) See more
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Genomic context

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Location:
4 D2.1; 4 55.08 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (118546349..118550231, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (118689152..118693034, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 13 subfamily P member 10 Neighboring gene olfactory receptor family 13 subfamily P member 9, pseudogene 1 Neighboring gene STARR-seq mESC enhancer starr_11207 Neighboring gene STARR-seq mESC enhancer starr_11208 Neighboring gene olfactory receptor family 13 subfamily P member 3 Neighboring gene olfactory receptor GA_x5J8B7W3BSW-105992-106801

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The olfactory receptor gene superfamily of the mouse. Zhang X, et al. Nat Neurosci, 2002 Feb. PMID 11802173
  2. Different evolutionary processes shaped the mouse and human olfactory receptor gene families. Young JM, et al. Hum Mol Genet, 2002 Mar 1. PMID 11875048
  3. Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels. Young JM, et al. Genome Biol, 2003. PMID 14611657, Free PMC Article
  4. A unified nomenclature for vertebrate olfactory receptors. Olender T, et al. BMC Evol Biol, 2020 Apr 15. PMID 32295537, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables olfactory receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables olfactory receptor activity ISO
Inferred from Sequence Orthology
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 PubMed 
involved_in detection of chemical stimulus involved in sensory perception of smell IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within sensory perception of smell ISO
Inferred from Sequence Orthology
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane ISO
Inferred from Sequence Orthology
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
olfactory receptor family 13 subfamily P member 4
Names
GA_x6K02T2QD9B-18856980-18857927
olfactory receptor 1342
olfactory receptor MOR258-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_146713.1 → NP_666924.1  olfactory receptor family 13 subfamily P member 4

    See identical proteins and their annotated locations for NP_666924.1

    Status: PROVISIONAL

    Source sequence(s)
    AY073382
    Consensus CDS
    CCDS18557.1
    UniProtKB/TrEMBL
    Q8VFY3
    Related
    ENSMUSP00000053925.4, ENSMUST00000060562.6
    Conserved Domains (2) summary
    cd14964
    Location:30 → 54
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:30 → 297
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    118546349..118550231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006503116.3 → XP_006503179.1  olfactory receptor family 13 subfamily P member 4 isoform X1

    See identical proteins and their annotated locations for XP_006503179.1

    UniProtKB/TrEMBL
    Q8VFY3
    Related
    ENSMUSP00000149966.2, ENSMUST00000216226.2
    Conserved Domains (2) summary
    cd14964
    Location:30 → 54
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:30 → 297
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein Strain
Heading Accession and Version

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